Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2187 ATGTTTTCAGAAATGGATCAGACGAATAGCAGTAACAACGGAGTGAGGTTTTCGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCGGCCGGAGGAGGAGGCGGCGGCGGAGGACGGGGAGGAGATCGATGCGGGAGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAACGAGCTTTTAGATTCTGGAATTGATGTAAATTTTCACGATATTGATAATCGGACGGCTCTTCATGTTGCTGCTTGTCAAGGCTCCTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATACTACAAAAACCATGAAGTTATCAAATTGTTGGAAAAACATGGAGCAAAACATCTGAATGCTCCCATGCTCGTAAAACATGCTCGTCAAGTTCCAGAATATGAAATTGATCCCGAGGAATTTGACTTCACAAACAGTGTCGACTTGACCAAGGGAACCTTCCATTTAGCATTATGGCGTGGAATCCGAGTTGCAGTTAAAGAGCTGCCCGAGGATGTGACTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAACTTGCATTGCTGCAGAAGCTTCGGCATCCGAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGGCAATTTTTACATAGAAAGGGAGCTTTAAAACCAATAGTAGCTGTGAAGCTTGCCCTTGATATTGCAAGGGGAATGAACTATCTGCACGAATACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGACGACACTGGGAACCTGAAAGTTGCAGATTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCAATGCCTGCCGATATGTTGCTCCAGAAGTTTTCAAAAACAATGGATACGATACCAAAGTGGATGTCTACTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGTCAACCGCCATTTTCAAACAAGAAAGAAAATTCCATTCTCAAAGGGCATGCAGACGGTGTACGCCCAGCTTTCAAAGCTCCAGCTAAATGCTATGCGCATGGAATCAAAGAGTTGATTATAGATTGCTGGGATGAGAGTCCATCGAAGAGACCAAGTTTTAGGCAGATAATCACAAGGCTGGAAACTATTCATCACAGTCTTAGCCACAGAAGGCGTTGGAAGGTTCATCTCTTTCTCTTCTTGAGAAAAGTTATATTTTATCCTCAGAAAAAACCAGAGTAA 1347 44.84 MFSEMDQTNSSNNGVRFSLGKQSSMAPERRPEEEAAAEDGEEIDAGVRLMYSANEGDLEGINELLDSGIDVNFHDIDNRTALHVAACQGSSEIVDLLLRRGAEIDPKDRWGSTPLADAIYYKNHEVIKLLEKHGAKHLNAPMLVKHARQVPEYEIDPEEFDFTNSVDLTKGTFHLALWRGIRVAVKELPEDVTSEEDKVNAFRDELALLQKLRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLWQFLHRKGALKPIVAVKLALDIARGMNYLHEYKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQGNACRYVAPEVFKNNGYDTKVDVYSFALILQEMIEGQPPFSNKKENSILKGHADGVRPAFKAPAKCYAHGIKELIIDCWDESPSKRPSFRQIITRLETIHHSLSHRRRWKVHLFLFLRKVIFYPQKKPE 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16457389 16463464 + Sed0019681.6 Sed01g2187 701491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2187 448 SUPERFAMILY Protein kinase-like (PK-like) 170 425 IPR011009 -
Sed01g2187 448 PIRSF ILK 2 438 - -
Sed01g2187 448 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 48 416 IPR051681 GO:0004674(PANTHER)
Sed01g2187 448 ProSiteProfiles Protein kinase domain profile. 127 422 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2187 448 SMART ANK_2a 44 73 IPR002110 GO:0005515(InterPro)
Sed01g2187 448 SMART ANK_2a 110 140 IPR002110 GO:0005515(InterPro)
Sed01g2187 448 SMART ANK_2a 77 106 IPR002110 GO:0005515(InterPro)
Sed01g2187 448 ProSiteProfiles Ankyrin repeat region circular profile. 77 109 - -
Sed01g2187 448 FunFam Integrin-linked protein kinase family 28 153 - -
Sed01g2187 448 Gene3D Transferase(Phosphotransferase) domain 1 160 424 - -
Sed01g2187 448 MobiDBLite consensus disorder prediction 1 43 - -
Sed01g2187 448 CDD STKc_MAP3K-like 171 415 - -
Sed01g2187 448 FunFam serine/threonine-protein kinase STY46-like 155 238 - -
Sed01g2187 448 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g2187 448 Pfam Ankyrin repeats (3 copies) 49 136 IPR002110 GO:0005515(InterPro)
Sed01g2187 448 MobiDBLite consensus disorder prediction 26 43 - -
Sed01g2187 448 Gene3D - 12 150 IPR036770 -
Sed01g2187 448 FunFam Integrin-linked protein kinase family 238 431 - -
Sed01g2187 448 Pfam Protein tyrosine and serine/threonine kinase 180 415 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2187 448 ProSiteProfiles Ankyrin repeat profile. 77 109 IPR002110 GO:0005515(InterPro)
Sed01g2187 448 SUPERFAMILY Ankyrin repeat 48 136 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2184 Sed-Chr1:16457389 Sed01g2187 Sed-Chr1:16457389 1.10E-225 dispersed
Sed01g2185 Sed-Chr1:16457389 Sed01g2187 Sed-Chr1:16457389 2.90E-216 dispersed
Sed01g2187 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 1.50E-180 dispersed
Sed01g2186 Sed-Chr1:16457389 Sed01g2187 Sed-Chr1:16457389 2.00E-167 tandem
Sed01g2187 Sed-Chr1:16457389 Sed01g2188 Sed-Chr1:16457389 4.30E-148 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78661 PF07714 PK_Tyr_Ser-Thr 1.00E-54 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2187 - - - 0.0