Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2189 ATGGATCAGACGAATAGCAGTAACAACGGAGTGAGGTTTTCGCTGGGGAAGCAGTCGTCGATGGCGCCGGAGCGGCGGCCGGAGGAGGAGGCGGCGGCGGAGGACGGGGAGGAGATCGATGCGGGAGTGAGATTGATGTATTCGGCGAATGAAGGCGATTTGGAAGGGATTAACGAGCTTTTAGATTCTGGAATTGATGTAAATTTTCACGATATTGATAATCGGACGGCTCTTCATGTTGCTGCTTGTCAAGGCTCCTCGGAGATCGTCGATTTGTTGCTCCGGCGAGGCGCTGAAATTGACCCCAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATACTACAAAAACCATGAAGTTATCAAATTGTTGGAAAAACATGGAGCAAAACATCTGAATGCTCCCATGCTCGTAAAACATGCTCGTCAAGTTCCAGAATATGAAATTGATCCCGAGGAATTTGACTTCACAAACAGTGTCGACTTGACCAAGGGAACCTTCCATTTAGCATTATGGCGTGGAATCCGAGTTGCAGTTAAAGAGCTGCCCGAGGATGTGACTTCAGAGGAGGATAAAGTGAACGCCTTTAGAGATGAACTTGCATTGCTGCAGAAGCTTCGGCATCCGAATGTCGTTCAATTTCTTGGTGCTGTCACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCAAAGGGAGATCTTTGGCAATTTTTACATAGAAAGGGAGCTTTAAAACCAATAGTAGCTGTGAAGCTTGCCCTTGATATTGCAAGGGGAATGAACTATCTGCACGAATACAAACCCGCGCCAATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGACGACACTGGGAACCTGAAAGTTGCAGATTTTGGAGTTAGCAAGTTGCTCACTGTCAAGGAGGATAAGCCTCTAACTTGTCAAGGCAATGCCTGTCAGATTTCCCTCTGCATAACCCATAAACTTACTCTTTTCATCATAACAAGCATTGAATAA 1017 46.02 MDQTNSSNNGVRFSLGKQSSMAPERRPEEEAAAEDGEEIDAGVRLMYSANEGDLEGINELLDSGIDVNFHDIDNRTALHVAACQGSSEIVDLLLRRGAEIDPKDRWGSTPLADAIYYKNHEVIKLLEKHGAKHLNAPMLVKHARQVPEYEIDPEEFDFTNSVDLTKGTFHLALWRGIRVAVKELPEDVTSEEDKVNAFRDELALLQKLRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLWQFLHRKGALKPIVAVKLALDIARGMNYLHEYKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQGNACQISLCITHKLTLFIITSIE 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16457389 16463464 + Sed0019681.8 Sed01g2189 701493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2189 338 Gene3D - 10 146 IPR036770 -
Sed01g2189 338 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 50 302 IPR051681 GO:0004674(PANTHER)
Sed01g2189 338 FunFam serine/threonine-protein kinase STY46-like 151 234 - -
Sed01g2189 338 MobiDBLite consensus disorder prediction 1 39 - -
Sed01g2189 338 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Sed01g2189 338 FunFam Integrin-linked protein kinase family 24 149 - -
Sed01g2189 338 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515(InterPro)
Sed01g2189 338 MobiDBLite consensus disorder prediction 1 16 - -
Sed01g2189 338 SUPERFAMILY Ankyrin repeat 44 132 IPR036770 -
Sed01g2189 338 Pfam Protein tyrosine and serine/threonine kinase 176 310 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2189 338 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Sed01g2189 338 SMART ANK_2a 73 102 IPR002110 GO:0005515(InterPro)
Sed01g2189 338 SMART ANK_2a 106 136 IPR002110 GO:0005515(InterPro)
Sed01g2189 338 Gene3D Transferase(Phosphotransferase) domain 1 155 322 - -
Sed01g2189 338 SUPERFAMILY Protein kinase-like (PK-like) 167 309 IPR011009 -
Sed01g2189 338 PIRSF ILK 1 327 - -
Sed01g2189 338 MobiDBLite consensus disorder prediction 22 39 - -
Sed01g2189 338 ProSiteProfiles Protein kinase domain profile. 123 338 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2189 338 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2189 Sed-Chr1:16457389 Sed08g2714 Sed-Chr8:39061769 7.60E-121 dispersed
Sed01g2188 Sed-Chr1:16457389 Sed01g2189 Sed-Chr1:16457389 2.70E-158 tandem
Sed01g2189 Sed-Chr1:16457389 Sed01g2190 Sed-Chr1:16457389 2.70E-158 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78663 PF07714 PK_Tyr_Ser-Thr 4.30E-33 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2189 - - - 0.0