Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2194 ATGGCAGTCGAAGACACGATCAAAGCCACATCCACGACGGAAGATCTCTCGAGCTCCATCGCAAATCTTAACCTTGCCAGACGTGGCGGCGCTGAGGAAGACAAGGAACTTGAGGAGGGTGAGATCCTCGGCGACGGCGACGGCGACCTCGACTCGTCCAATTCATCGGCGCCGATAGTGCACCAGCCTCACCCTCTCGAGCATTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAGTCCAAACAGACCACTTGGGGTGCGTCTATTCGTCCGATCTATACCATCTCTTCTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAATATTAAGCCTAAATGGGAGGATCCTGTTTGTGCGACTGGAGGGAGATGGACTGTAAACTTGTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAATTTGGCTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGACCTGGGCAGGATAAACTATCAATTTGGACAAAGAATGCTTCCATTGAAGCTGCGCAGGTGAGCATTGCAAAACAGTGGAAGGAGTTCCTTGATTGCAACGACACGATTGGCTTTATATCCCACGACGATGCAAAGAAATTCGACAGACATGCGAAGAACAAATATACGGTATAA 720 47.78 MAVEDTIKATSTTEDLSSSIANLNLARRGGAEEDKELEEGEILGDGDGDLDSSNSSAPIVHQPHPLEHSWTFWFDNPSAKSKQTTWGASIRPIYTISSVEEFWSVYNNIHHPSKLALRADLYCFKHNIKPKWEDPVCATGGRWTVNLSRGKSDNGWLYTLLAMIGEQFGCGDEICGAVVNVRPGQDKLSIWTKNASIEAAQVSIAKQWKEFLDCNDTIGFISHDDAKKFDRHAKNKYTV 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16491400 16498569 - Sed0012110.1 Sed01g2194 701498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2194 239 ProSitePatterns Eukaryotic initiation factor 4E signature. 120 143 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed01g2194 239 MobiDBLite consensus disorder prediction 30 59 - -
Sed01g2194 239 SUPERFAMILY eIF4e-like 57 235 IPR023398 -
Sed01g2194 239 FunFam Eukaryotic translation initiation factor 4E 55 239 - -
Sed01g2194 239 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 39 232 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed01g2194 239 Pfam Eukaryotic initiation factor 4E 65 216 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed01g2194 239 Gene3D RNA Cap, Translation Initiation Factor Eif4e 55 239 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2194 Sed-Chr1:16491400 Sed04g2012 Sed-Chr4:34586625 1.60E-53 dispersed
Sed01g2194 Sed-Chr1:16491400 Sed01g2195 Sed-Chr1:16491400 2.70E-141 tandem
Sed01g2194 Sed-Chr1:16491400 Sed08g2704 Sed-Chr8:39011652 2.70E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2194 K03259 - csv:101206312 386.726