Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2194 | ATGGCAGTCGAAGACACGATCAAAGCCACATCCACGACGGAAGATCTCTCGAGCTCCATCGCAAATCTTAACCTTGCCAGACGTGGCGGCGCTGAGGAAGACAAGGAACTTGAGGAGGGTGAGATCCTCGGCGACGGCGACGGCGACCTCGACTCGTCCAATTCATCGGCGCCGATAGTGCACCAGCCTCACCCTCTCGAGCATTCTTGGACCTTCTGGTTCGATAACCCCTCTGCCAAGTCCAAACAGACCACTTGGGGTGCGTCTATTCGTCCGATCTATACCATCTCTTCTGTTGAGGAGTTTTGGAGTGTTTACAACAATATTCATCATCCAAGCAAATTGGCATTGAGGGCAGATTTGTACTGCTTTAAACATAATATTAAGCCTAAATGGGAGGATCCTGTTTGTGCGACTGGAGGGAGATGGACTGTAAACTTGTCAAGGGGCAAATCTGATAATGGCTGGCTGTACACGCTGCTTGCTATGATCGGAGAACAATTTGGCTGTGGTGATGAAATTTGTGGAGCAGTTGTTAATGTTAGACCTGGGCAGGATAAACTATCAATTTGGACAAAGAATGCTTCCATTGAAGCTGCGCAGGTGAGCATTGCAAAACAGTGGAAGGAGTTCCTTGATTGCAACGACACGATTGGCTTTATATCCCACGACGATGCAAAGAAATTCGACAGACATGCGAAGAACAAATATACGGTATAA | 720 | 47.78 | MAVEDTIKATSTTEDLSSSIANLNLARRGGAEEDKELEEGEILGDGDGDLDSSNSSAPIVHQPHPLEHSWTFWFDNPSAKSKQTTWGASIRPIYTISSVEEFWSVYNNIHHPSKLALRADLYCFKHNIKPKWEDPVCATGGRWTVNLSRGKSDNGWLYTLLAMIGEQFGCGDEICGAVVNVRPGQDKLSIWTKNASIEAAQVSIAKQWKEFLDCNDTIGFISHDDAKKFDRHAKNKYTV | 239 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16491400 | 16498569 | - | Sed0012110.1 | Sed01g2194 | 701498 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2194 | 239 | ProSitePatterns | Eukaryotic initiation factor 4E signature. | 120 | 143 | IPR019770 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro) | |
Sed01g2194 | 239 | MobiDBLite | consensus disorder prediction | 30 | 59 | - | - | |
Sed01g2194 | 239 | SUPERFAMILY | eIF4e-like | 57 | 235 | IPR023398 | - | |
Sed01g2194 | 239 | FunFam | Eukaryotic translation initiation factor 4E | 55 | 239 | - | - | |
Sed01g2194 | 239 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED | 39 | 232 | IPR001040 | GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER) | |
Sed01g2194 | 239 | Pfam | Eukaryotic initiation factor 4E | 65 | 216 | IPR001040 | GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro) | |
Sed01g2194 | 239 | Gene3D | RNA Cap, Translation Initiation Factor Eif4e | 55 | 239 | IPR023398 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2194 | Sed-Chr1:16491400 | Sed04g2012 | Sed-Chr4:34586625 | 1.60E-53 | dispersed | |
Sed01g2194 | Sed-Chr1:16491400 | Sed01g2195 | Sed-Chr1:16491400 | 2.70E-141 | tandem | |
Sed01g2194 | Sed-Chr1:16491400 | Sed08g2704 | Sed-Chr8:39011652 | 2.70E-104 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2194 | K03259 | - | csv:101206312 | 386.726 |