Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2201 | ATGAATCGGAGCGGAGAAAGAGGAGCCATGGCGGTTTCCTCATCGGCGGACAGCAACATGAGGGCTCGCCCTAGCAACACCGCCAGCACCGGCAACAGAACGGCGGCTCTTGTTCAATACAATGCCGATGCTGGACTCTTGAACAGGTTTGAGCAATCGGATGCTTCCGGTGAGTCTTTTAATTACTCTAGGTCGGTTCTCGAAGCTCCCCAATCTGTTCCCGAAGAGCAAATCTCTGTTTACCTCTCTAGGATTCAGAGGGGCGGTTTCGTTCAATCCTTTGGCTGCTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTACAGCGAGAATTGTTTTGAGTTGTTGGGGTTGAATGATCAGTTTGAGTCGGCGCAGGGGAAGGGCTTGATTGGGATTGATATGAGGGCTTTGTTTACGCCTTCCTCGGGTGCTTCTTTGGCCAAAGCGGCTTCCTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTACATTCTAGGGCTAATCAGAAGCCGTTTTATGCTATAATGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGGTGATCCTGCATTGTCGATAGCGGGCGCTGTTCAGTCGCAGAAACTTGCGGTTCGGGCGATTTCCAGGTTGCAGGCTCTACCTGCTGCTGATATTGGTGTGTTATGTGACACGGTTGTGGAAAATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGACGATGAACACGGTGAAGTGGTGTCTGAAATTAGGAGGTCGGATTTAGAGCCATACCTGGGGTTACATTATCCTGCCATTGATATACCTCAAGCTGCTCGTTTTTTGTTCAAGCAGAACCGCGTTAGGATAATTTGTGATTGCGATGCAAAGCCTGTGCGGGTCATTCAAAGTGATGAGCTTGAGCAGCCTCTTTGTTTGGTGAATTCAACTCTTCGATCACCTCATAGCTGTCATTTGCAGTACATGACAAATATGGGTTCCTTATCCTCTTTAGTGATGGCGGTAACCATGAATAGTGATGACTCGTCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCTACATGGACCTTCAATTGTCACTGCAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTTAGAGGCTCACCATTTGCATTGCTGACACAGTCTCCTAGTATAAAGGATCTTGTGAAATGTGATGGTGCAGCATTGTACTATAACGGGGCATGTTGTTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAATGGGTACTCAATAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGGGATGCAGTGTGCGGTATGGCGGCTGCAAAAATTAGTTCAAAAGATTTCTTATTCTGGTTTAGGTCCCATGCTGCAAAGGAAATCCAATGGGGGGGAGCCAGGCATCATCCAGAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCTTCATTTAAAGCATTTCTTGAAGTTGCAAAGTGTAAAAGTTTACCGTGGGAAGTTCATGAAATAAATGTCATTCATTCATCGCAGCTTATTATGAGGGAGTCTTTTTCGAACTCTGGGGACAGTGATATAAAGACAGAAATGTCAGCCCAGCGGAGTGAATCTGAGGTCCAGGATATTAACGAACTCAGTACAGTCGCCTGCGAAATGGTTAGGTTGATTGAAACAGCAACCATTCCAATTTTGGGTGTCGACTCAACTGGTGTGATAAATGGATGGAATGCTAAAATTTCTGAACTTGTAGGATTACAAACTAGTGAAGCTTTGGGGAGATCTTTGGTTAAGGAAATCGTTCATGAAGATTCACGTGGAACCGCTGAAGATTTTCTTTTTCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTGAAACTGAGAAGCTTTGGAACTGATAAAGAAAACTCTACCATTTATATTGTAGTTAATGCTTGCACAAGTAGGGATTACACGAAAAAAATTGTCGGGGTCTGCCTTGTTGGGAAAGATGTTACATCTGAGAAGGGTGTGATGGATAAATTTATCCGTCTGCAAGGAGATTATAAGACTATTATTGAAAGTCTGAGTCCATTAATTCCACCAATATTTGCTTCGGACGAGAATGGTTATTGCTGTGAATGGACTGCAGCCATGGAAAAACTTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTCTGTAGGCTGAAAGGTCTGGATACCCTCACTAGGTTTATGATCCTACTATATCAAGGTGTTGGTGGTGAAGAAACCGAGAGGTTTCCGTTAGGATTTTTCGATAAGGATGGGAACTATGTGGAGGTACTGTTAGCTTCAAACAAGAGGACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTACAAATTGTTGAGCCTAACTCGCAAGGGGTCTCTGAAGGACTTGGGCTAGGCAACAGAGAAGGCAATTTGCAGCTTAAGGAGTTGACTTACATAAAACAGGAGATGAAGAATCCTTTAAATGGCATCAGATTTACTCATGAGCTCCTTGTAAACTCTGGCATGACAGAAAACCAGAAACTCTTCCTCGATACTAGTGACGCATGCGAGAAACAAATCAAGACTATCATAGAGGATATGGACTTCAAAAGTTTAGAAGGAGGTCAAGTAGAGGTAAACAGAGAAGAATTTCTCCTGGGGAGTGTTCTGGACGCCATTATCTGTCAAATCATGACTGTTGTCAGAGAGAAGAATATGAAACTTTTTCATGAAATTCCAGAAGAAATCAAAATGTTAACTCTTTACGGCGATCAAATTAAGCTCCAGCTGGTTTTGTCGGATTTCTTACTTAACGTAGTGCAGTACGCGCCTGATCTGGAAGGTTGGGTCGAAATCAAAATTTCGTCTGGTTTGAAGCTTATACAAGATGGAAATGAACATATTCACTTGCAGATCAGAATGACACATCCAGGCCAAGGTCTGCCTCCTGAACTAATCCAAGATATGGTTGGTGGAGGACAGCAGTGGACTTCACAGCAAGGCCTTGCCCTAAACCTGACACGTAGACTTCTCAATAAATTGAACGGCAGCGTTCGTTACGTTAGAGAGCAAGCTAAATGCTACTTCCTCATCGATCTTGATTTCAAGTTAAGGCGCTCAAGGGGGTCGATGGAAGCTTCTACAAGTGAAAGGCCATGA | 3387 | 44.26 | MNRSGERGAMAVSSSADSNMRARPSNTASTGNRTAALVQYNADAGLLNRFEQSDASGESFNYSRSVLEAPQSVPEEQISVYLSRIQRGGFVQSFGCLLAIDESSFKIISYSENCFELLGLNDQFESAQGKGLIGIDMRALFTPSSGASLAKAASSREISLLNPVWVHSRANQKPFYAIMHRIDVGIVIDLEPARSGDPALSIAGAVQSQKLAVRAISRLQALPAADIGVLCDTVVENVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRIICDCDAKPVRVIQSDELEQPLCLVNSTLRSPHSCHLQYMTNMGSLSSLVMAVTMNSDDSSTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMDLQLSLQLTEKKVLKTQTLLCDMLLRGSPFALLTQSPSIKDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAAKISSKDFLFWFRSHAAKEIQWGGARHHPEDKDDGGRMHPRSSFKAFLEVAKCKSLPWEVHEINVIHSSQLIMRESFSNSGDSDIKTEMSAQRSESEVQDINELSTVACEMVRLIETATIPILGVDSTGVINGWNAKISELVGLQTSEALGRSLVKEIVHEDSRGTAEDFLFHALQGKEDKNVELKLRSFGTDKENSTIYIVVNACTSRDYTKKIVGVCLVGKDVTSEKGVMDKFIRLQGDYKTIIESLSPLIPPIFASDENGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETERFPLGFFDKDGNYVEVLLASNKRTDAEGNAIGCICFLQIVEPNSQGVSEGLGLGNREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGMTENQKLFLDTSDACEKQIKTIIEDMDFKSLEGGQVEVNREEFLLGSVLDAIICQIMTVVREKNMKLFHEIPEEIKMLTLYGDQIKLQLVLSDFLLNVVQYAPDLEGWVEIKISSGLKLIQDGNEHIHLQIRMTHPGQGLPPELIQDMVGGGQQWTSQQGLALNLTRRLLNKLNGSVRYVREQAKCYFLIDLDFKLRRSRGSMEASTSERP | 1128 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 16527215 | 16533400 | - | Sed0026665.1 | Sed01g2201 | 701505 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2201 | 1128 | NCBIfam | PAS domain S-box protein | 619 | 734 | IPR000014 | - | |
| Sed01g2201 | 1128 | Gene3D | PAS domain | 84 | 329 | - | - | |
| Sed01g2201 | 1128 | FunFam | Phytochrome | 402 | 531 | - | - | |
| Sed01g2201 | 1128 | Gene3D | - | 929 | 1104 | IPR036890 | - | |
| Sed01g2201 | 1128 | ProSiteProfiles | Histidine kinase domain profile. | 894 | 1113 | IPR005467 | - | |
| Sed01g2201 | 1128 | SMART | HisKA_10 | 887 | 951 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Sed01g2201 | 1128 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
| Sed01g2201 | 1128 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 326 | 335 | IPR013516 | - | |
| Sed01g2201 | 1128 | MobiDBLite | consensus disorder prediction | 7 | 34 | - | - | |
| Sed01g2201 | 1128 | Pfam | GAF domain | 227 | 393 | IPR003018 | GO:0005515(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 708 | 725 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 634 | 649 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 427 | 447 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 545 | 563 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 141 | 163 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 241 | 260 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 326 | 347 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 728 | 748 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 615 | 631 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | PRINTS | Phytochrome signature | 512 | 531 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 999 | 1109 | IPR003594 | - | |
| Sed01g2201 | 1128 | Pfam | PAS fold | 81 | 193 | IPR013654 | GO:0006355(InterPro) | |
| Sed01g2201 | 1128 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 760 | 862 | IPR035965 | - | |
| Sed01g2201 | 1128 | Gene3D | - | 402 | 573 | IPR043150 | - | |
| Sed01g2201 | 1128 | ProSiteProfiles | PAS repeat profile. | 612 | 683 | IPR000014 | - | |
| Sed01g2201 | 1128 | SMART | pas_2 | 745 | 815 | IPR000014 | - | |
| Sed01g2201 | 1128 | SMART | pas_2 | 614 | 681 | IPR000014 | - | |
| Sed01g2201 | 1128 | Pfam | His Kinase A (phospho-acceptor) domain | 890 | 951 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Sed01g2201 | 1128 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 85 | 195 | IPR035965 | - | |
| Sed01g2201 | 1128 | Pfam | Phytochrome region | 410 | 583 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Sed01g2201 | 1128 | Gene3D | - | 207 | 558 | IPR029016 | - | |
| Sed01g2201 | 1128 | ProSiteProfiles | PAS repeat profile. | 746 | 798 | IPR000014 | - | |
| Sed01g2201 | 1128 | SMART | HKATPase_4 | 999 | 1113 | IPR003594 | - | |
| Sed01g2201 | 1128 | FunFam | Phytochrome | 608 | 740 | - | - | |
| Sed01g2201 | 1128 | Pfam | PAS fold | 615 | 730 | IPR013767 | GO:0006355(InterPro) | |
| Sed01g2201 | 1128 | Pfam | PAS fold | 746 | 865 | IPR013767 | GO:0006355(InterPro) | |
| Sed01g2201 | 1128 | CDD | PAS | 757 | 865 | IPR000014 | - | |
| Sed01g2201 | 1128 | PIRSF | Phytochrome_conventional | 12 | 1120 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Sed01g2201 | 1128 | PANTHER | OS08G0260000 PROTEIN | 17 | 991 | - | - | |
| Sed01g2201 | 1128 | ProSiteProfiles | PAC domain profile. | 686 | 742 | IPR000700 | - | |
| Sed01g2201 | 1128 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 944 | 1100 | IPR036890 | - | |
| Sed01g2201 | 1128 | CDD | HisKA | 892 | 943 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Sed01g2201 | 1128 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 226 | 387 | IPR016132 | - | |
| Sed01g2201 | 1128 | CDD | HATPase_Phy-like | 998 | 1111 | IPR044767 | - | |
| Sed01g2201 | 1128 | FunFam | Phytochrome | 759 | 867 | - | - | |
| Sed01g2201 | 1128 | Gene3D | PAS domain | 613 | 734 | - | - | |
| Sed01g2201 | 1128 | Gene3D | PAS domain | 759 | 871 | - | - | |
| Sed01g2201 | 1128 | SMART | gaf_1 | 226 | 407 | IPR003018 | GO:0005515(InterPro) | |
| Sed01g2201 | 1128 | SUPERFAMILY | GAF domain-like | 206 | 393 | - | - | |
| Sed01g2201 | 1128 | SUPERFAMILY | GAF domain-like | 405 | 581 | - | - | |
| Sed01g2201 | 1128 | CDD | PAS | 623 | 730 | IPR000014 | - | |
| Sed01g2201 | 1128 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 618 | 726 | IPR035965 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2201 | Sed-Chr1:16527215 | Sed02g1136 | Sed-Chr2:48568134 | 0.00E+00 | dispersed | |
| Sed01g2201 | Sed-Chr1:16527215 | Sed01g2202 | Sed-Chr1:16527215 | 0.00E+00 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2201 | K12123 | - | csv:101214900 | 1921.75 |