Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2202 ATGAATCGGAGCGGAGAAAGAGGAGCCATGGCGGTTTCCTCATCGGCGGACAGCAACATGAGGGCTCGCCCTAGCAACACCGCCAGCACCGGCAACAGAACGGCGGCTCTTGTTCAATACAATGCCGATGCTGGACTCTTGAACAGGTTTGAGCAATCGGATGCTTCCGGTGAGTCTTTTAATTACTCTAGGTCGGTTCTCGAAGCTCCCCAATCTGTTCCCGAAGAGCAAATCTCTGTTTACCTCTCTAGGATTCAGAGGGGCGGTTTCGTTCAATCCTTTGGCTGCTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTACAGCGAGAATTGTTTTGAGTTGTTGGGGTTGAATGATCAGTTTGAGTCGGCGCAGGGGAAGGGCTTGATTGGGATTGATATGAGGGCTTTGTTTACGCCTTCCTCGGGTGCTTCTTTGGCCAAAGCGGCTTCCTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTACATTCTAGGGCTAATCAGAAGCCGTTTTATGCTATAATGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGGTGATCCTGCATTGTCGATAGCGGGCGCTGTTCAGTCGCAGAAACTTGCGGTTCGGGCGATTTCCAGGTTGCAGGCTCTACCTGCTGCTGATATTGGTGTGTTATGTGACACGGTTGTGGAAAATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGACGATGAACACGGTGAAGTGGTGTCTGAAATTAGGAGGTCGGATTTAGAGCCATACCTGGGGTTACATTATCCTGCCATTGATATACCTCAAGCTGCTCGTTTTTTGTTCAAGCAGAACCGCGTTAGGATAATTTGTGATTGCGATGCAAAGCCTGTGCGGGTCATTCAAAGTGATGAGCTTGAGCAGCCTCTTTGTTTGGTGAATTCAACTCTTCGATCACCTCATAGCTGTCATTTGCAGTACATGACAAATATGGGTTCCTTATCCTCTTTAGTGATGGCGGTAACCATGAATAGTGATGACTCGTCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCTACATGGACCTTCAATTGTCACTGCAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTTAGAGGCTCACCATTTGCATTGCTGACACAGTCTCCTAGTATAAAGGATCTTGTGAAATGTGATGGTGCAGCATTGTACTATAACGGGGCATGTTGTTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAATGGGTACTCAATAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGGGATGCAGTGTGCGGTATGGCGGCTGCAAAAATTAGTTCAAAAGATTTCTTATTCTGGTTTAGGTCCCATGCTGCAAAGGAAATCCAATGGGGGGGAGCCAGGCATCATCCAGAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCTTCATTTAAAGCATTTCTTGAAGTTGCAAAGTGTAAAAGTTTACCGTGGGAAGTTCATGAAATAAATGTCATTCATTCATCGCAGCTTATTATGAGGGAGTCTTTTTCGAACTCTGGGGACAGTGATATAAAGACAGAAATGTCAGCCCAGCGGAGTGAATCTGAGGTCCAGGATATTAACGAACTCAGTACAGTCGCCTGCGAAATGGTTAGGTTGATTGAAACAGCAACCATTCCAATTTTGGGTGTCGACTCAACTGGTGTGATAAATGGATGGAATGCTAAAATTTCTGAACTTGTAGGATTACAAACTAGTGAAGCTTTGGGGAGATCTTTGGTTAAGGAAATCGTTCATGAAGATTCACGTGGAACCGCTGAAGATTTTCTTTTTCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTGAAACTGAGAAGCTTTGGAACTGATAAAGAAAACTCTACCATTTATATTGTAGTTAATGCTTGCACAAGTAGGGATTACACGAAAAAAATTGTCGGGGTCTGCCTTGTTGGGAAAGATGTTACATCTGAGAAGGGTGTGATGGATAAATTTATCCGTCTGCAAGGAGATTATAAGACTATTATTGAAAGTCTGAGTCCATTAATTCCACCAATATTTGCTTCGGACGAGAATGGTTATTGCTGTGAATGGACTGCAGCCATGGAAAAACTTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTCTGTAGGCTGAAAGGTCTGGATACCCTCACTAGGTTTATGATCCTACTATATCAAGGTGTTGGTGGTGAAGAAACCGAGAGGTTTCCGTTAGGATTTTTCGATAAGGATGGGAACTATGTGGAGGTACTGTTAGCTTCAAACAAGAGGACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTACAAATTGTTGAGCCTAACTCGCAAGGGGTCTCTGAAGGACTTGGGCTAGGCAACAGAGAAGGCAATTTGCAGCTTAAGGAGTTGACTTACATAAAACAGGAGATGAAGAATCCTTTAAATGGCATCAGATTTACTCATGAGCTCCTTGTAAACTCTGGCATGACAGAAAACCAGAAACTCTTCCTCGATACTAGTGACGCATGCGAGAAACAAATCAAGACTATCATAGAGGATATGGACTTCAAAAGTTTAGAAGGAGGGTAA 2856 44.47 MNRSGERGAMAVSSSADSNMRARPSNTASTGNRTAALVQYNADAGLLNRFEQSDASGESFNYSRSVLEAPQSVPEEQISVYLSRIQRGGFVQSFGCLLAIDESSFKIISYSENCFELLGLNDQFESAQGKGLIGIDMRALFTPSSGASLAKAASSREISLLNPVWVHSRANQKPFYAIMHRIDVGIVIDLEPARSGDPALSIAGAVQSQKLAVRAISRLQALPAADIGVLCDTVVENVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRIICDCDAKPVRVIQSDELEQPLCLVNSTLRSPHSCHLQYMTNMGSLSSLVMAVTMNSDDSSTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMDLQLSLQLTEKKVLKTQTLLCDMLLRGSPFALLTQSPSIKDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAAKISSKDFLFWFRSHAAKEIQWGGARHHPEDKDDGGRMHPRSSFKAFLEVAKCKSLPWEVHEINVIHSSQLIMRESFSNSGDSDIKTEMSAQRSESEVQDINELSTVACEMVRLIETATIPILGVDSTGVINGWNAKISELVGLQTSEALGRSLVKEIVHEDSRGTAEDFLFHALQGKEDKNVELKLRSFGTDKENSTIYIVVNACTSRDYTKKIVGVCLVGKDVTSEKGVMDKFIRLQGDYKTIIESLSPLIPPIFASDENGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETERFPLGFFDKDGNYVEVLLASNKRTDAEGNAIGCICFLQIVEPNSQGVSEGLGLGNREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGMTENQKLFLDTSDACEKQIKTIIEDMDFKSLEGG 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16527215 16533400 - Sed0026665.2 Sed01g2202 701506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2202 951 SUPERFAMILY GAF domain-like 206 393 - -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 862 IPR035965 -
Sed01g2202 951 Gene3D - 402 573 IPR043150 -
Sed01g2202 951 SMART HisKA_10 887 951 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 MobiDBLite consensus disorder prediction 1 34 - -
Sed01g2202 951 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Sed01g2202 951 MobiDBLite consensus disorder prediction 7 34 - -
Sed01g2202 951 Pfam His Kinase A (phospho-acceptor) domain 890 951 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 Gene3D PAS domain 613 734 - -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 195 IPR035965 -
Sed01g2202 951 ProSiteProfiles PAS repeat profile. 612 683 IPR000014 -
Sed01g2202 951 SMART pas_2 745 815 IPR000014 -
Sed01g2202 951 SMART pas_2 614 681 IPR000014 -
Sed01g2202 951 Gene3D - 207 558 IPR029016 -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 726 IPR035965 -
Sed01g2202 951 SUPERFAMILY GAF domain-like 405 581 - -
Sed01g2202 951 Gene3D PAS domain 84 329 - -
Sed01g2202 951 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Sed01g2202 951 NCBIfam PAS domain S-box protein 619 734 IPR000014 -
Sed01g2202 951 PANTHER OS08G0260000 PROTEIN 17 702 - -
Sed01g2202 951 Pfam PAS fold 81 193 IPR013654 GO:0006355(InterPro)
Sed01g2202 951 FunFam Phytochrome 402 531 - -
Sed01g2202 951 FunFam Phytochrome 759 867 - -
Sed01g2202 951 CDD PAS 757 865 IPR000014 -
Sed01g2202 951 Gene3D PAS domain 759 871 - -
Sed01g2202 951 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Sed01g2202 951 CDD HisKA 892 943 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 387 IPR016132 -
Sed01g2202 951 Pfam Phytochrome region 410 583 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 FunFam Phytochrome 608 740 - -
Sed01g2202 951 Pfam PAS fold 615 730 IPR013767 GO:0006355(InterPro)
Sed01g2202 951 Pfam PAS fold 746 865 IPR013767 GO:0006355(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 SMART gaf_1 226 407 IPR003018 GO:0005515(InterPro)
Sed01g2202 951 Pfam GAF domain 227 393 IPR003018 GO:0005515(InterPro)
Sed01g2202 951 CDD PAS 623 730 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2202 K12123 - - csv:101214900 1623.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2202 Sed-Chr1:16527215 Sed02g1136 Sed-Chr2:48568134 0.00E+00 dispersed
Sed01g2201 Sed-Chr1:16527215 Sed01g2202 Sed-Chr1:16527215 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g343 . . . . . . Bma14g00963 Bma01g01487 . Cmo18g00427 . . . . . Cpe09g00775 . . . . . . . . . . . . . . . . . . . . . Chy12g00013 . . . . . Bpe02g00962 . . . Sed01g2202 . . Cma13g00567 Cma18g00452 Car13g00449 Car18g00423 . Cpe20g00493 Bhi08g02111 Tan05g2567 Cmetu12g0178 Lac10g1014 Hepe07g1806 . . Cla03g00672 Cam03g0721 Cec03g0697 Cco03g0733 Clacu03g0719 Cmu03g1310 Cre03g1005 Lsi02g00857 Csa01g02269 . Cme12g01234
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0961 . 16 1220 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1455.7
Sed04g0960 . 5 1194 Histidine Kinase Gene Family AT2G17820 65.0 0.0e+00 1454.9
Sed03g1085 . 23 986 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1320.4
Sed06g0270 . 36 1011 Histidine Kinase Gene Family AT2G01830 70.3 0.0e+00 1312.4
Sed06g0268 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed06g0269 . 36 989 Histidine Kinase Gene Family AT2G01830 68.6 0.0e+00 1270.8
Sed07g0081 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed07g0082 . 58 1000 Histidine Kinase Gene Family AT2G01830 52.6 1.0e-272 937.6
Sed05g2083 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed05g2084 . 256 1206 Histidine Kinase Gene Family AT2G01830 53.3 8.6e-272 934.5
Sed09g0384 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed09g0383 . 72 1026 Histidine Kinase Gene Family AT2G01830 52.3 4.0e-269 925.6
Sed05g0964 . 302 1249 Histidine Kinase Gene Family AT2G01830 51.5 2.7e-265 912.9
Sed01g0554 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0555 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0556 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed01g0557 . 276 1231 Histidine Kinase Gene Family AT2G01830 51.3 1.0e-264 911.0
Sed13g1937 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed13g1938 . 1 987 Histidine Kinase Gene Family AT5G10720 58.4 5.3e-294 1008.1
Sed05g1812 . 1 986 Histidine Kinase Gene Family AT5G10720 57.1 1.7e-287 986.5
Sed13g1939 . 1 899 Histidine Kinase Gene Family AT5G10720 57.7 4.7e-258 888.6
Sed11g0823 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0824 . 1 1121 Histidine Kinase Gene Family AT1G09570 79.1 0.0e+00 1807.7
Sed11g0858 . 15 1114 Histidine Kinase Gene Family AT1G09570 71.1 0.0e+00 1598.6
Sed05g2127 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed05g2128 . 18 1110 Histidine Kinase Gene Family AT1G09570 55.5 0.0e+00 1224.2
Sed02g1136 . 27 1120 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1194.9
Sed12g0771 . 31 1124 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1178.7
Sed12g0772 . 31 1035 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1125.9
Sed12g0772 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.1 0.0e+00 1640.2
Sed12g0771 . 34 1065 Histidine Kinase Gene Family AT2G18790 78.0 0.0e+00 1639.0
Sed02g1136 . 13 1061 Histidine Kinase Gene Family AT2G18790 77.4 0.0e+00 1634.0
Sed01g2201 . 7 1049 Histidine Kinase Gene Family AT2G18790 58.9 0.0e+00 1227.6
Sed01g2202 . 7 951 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1142.9
Sed11g0823 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed11g0824 . 21 1055 Histidine Kinase Gene Family AT2G18790 52.7 1.8e-312 1069.7
Sed05g2127 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed05g2128 . 26 1067 Histidine Kinase Gene Family AT2G18790 51.9 5.3e-312 1068.1
Sed11g0858 . 19 1047 Histidine Kinase Gene Family AT2G18790 51.4 1.4e-307 1053.5
Sed05g2127 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed05g2128 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.3 0.0e+00 1360.9
Sed12g0771 . 31 1126 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1139.8
Sed02g1136 . 27 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1132.1
Sed11g0823 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed11g0824 . 9 1115 Histidine Kinase Gene Family AT5G35840 51.3 0.0e+00 1098.2
Sed12g0772 . 31 1038 Histidine Kinase Gene Family AT5G35840 53.4 0.0e+00 1092.8
Sed02g1136 . 3 1122 Histidine Kinase Gene Family AT4G16250 74.9 0.0e+00 1691.4
Sed12g0771 . 34 1126 Histidine Kinase Gene Family AT4G16250 75.5 0.0e+00 1681.8
Sed12g0772 . 34 1063 Histidine Kinase Gene Family AT4G16250 75.6 0.0e+00 1584.3
Sed01g2201 . 30 1110 Histidine Kinase Gene Family AT4G16250 57.5 0.0e+00 1267.7
Sed01g2202 . 30 951 Histidine Kinase Gene Family AT4G16250 59.8 0.0e+00 1129.0
Sed11g0823 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed11g0824 . 8 1116 Histidine Kinase Gene Family AT4G16250 51.9 0.0e+00 1112.8
Sed05g2127 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed05g2128 . 28 1113 Histidine Kinase Gene Family AT4G16250 51.7 0.0e+00 1109.4
Sed11g0858 . 13 1112 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1090.5
Sed01g2201 . 13 1124 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1355.5
Sed02g1136 . 3 1120 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1274.6
Sed12g0771 . 43 1124 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1261.1
Sed01g2202 . 13 951 Histidine Kinase Gene Family AT4G18130 64.3 0.0e+00 1198.3
Sed12g0772 . 43 1065 Histidine Kinase Gene Family AT4G18130 58.7 0.0e+00 1192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009148 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 0 2 1 1 1 1 1 1 1 1 2 1 1 34