Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2202 ATGAATCGGAGCGGAGAAAGAGGAGCCATGGCGGTTTCCTCATCGGCGGACAGCAACATGAGGGCTCGCCCTAGCAACACCGCCAGCACCGGCAACAGAACGGCGGCTCTTGTTCAATACAATGCCGATGCTGGACTCTTGAACAGGTTTGAGCAATCGGATGCTTCCGGTGAGTCTTTTAATTACTCTAGGTCGGTTCTCGAAGCTCCCCAATCTGTTCCCGAAGAGCAAATCTCTGTTTACCTCTCTAGGATTCAGAGGGGCGGTTTCGTTCAATCCTTTGGCTGCTTGCTTGCGATTGATGAGTCTAGTTTTAAGATTATTAGCTACAGCGAGAATTGTTTTGAGTTGTTGGGGTTGAATGATCAGTTTGAGTCGGCGCAGGGGAAGGGCTTGATTGGGATTGATATGAGGGCTTTGTTTACGCCTTCCTCGGGTGCTTCTTTGGCCAAAGCGGCTTCCTCCAGGGAGATTTCGCTGTTGAACCCTGTTTGGGTACATTCTAGGGCTAATCAGAAGCCGTTTTATGCTATAATGCATAGGATTGATGTGGGGATTGTGATTGATTTGGAGCCTGCACGGTCTGGTGATCCTGCATTGTCGATAGCGGGCGCTGTTCAGTCGCAGAAACTTGCGGTTCGGGCGATTTCCAGGTTGCAGGCTCTACCTGCTGCTGATATTGGTGTGTTATGTGACACGGTTGTGGAAAATGTTCAGAAGCTTACAGGGTATGATAGAGTGATGGTGTATAAGTTCCATGACGATGAACACGGTGAAGTGGTGTCTGAAATTAGGAGGTCGGATTTAGAGCCATACCTGGGGTTACATTATCCTGCCATTGATATACCTCAAGCTGCTCGTTTTTTGTTCAAGCAGAACCGCGTTAGGATAATTTGTGATTGCGATGCAAAGCCTGTGCGGGTCATTCAAAGTGATGAGCTTGAGCAGCCTCTTTGTTTGGTGAATTCAACTCTTCGATCACCTCATAGCTGTCATTTGCAGTACATGACAAATATGGGTTCCTTATCCTCTTTAGTGATGGCGGTAACCATGAATAGTGATGACTCGTCAACAAGGTTATGGGGCCTGGTAGTGTGCCACCATACTTCTCCGCGATATGTCCCTTTCCCACTTCGTTATGCTTGCGAGTTTCTCATGCAGGCATTTGGGCTGCAGCTCTACATGGACCTTCAATTGTCACTGCAATTAACAGAGAAAAAGGTTCTCAAGACACAAACTTTACTCTGTGACATGCTCCTTAGAGGCTCACCATTTGCATTGCTGACACAGTCTCCTAGTATAAAGGATCTTGTGAAATGTGATGGTGCAGCATTGTACTATAACGGGGCATGTTGTTTACTAGGTGTAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAATGGGTACTCAATAACCATGGGGATTCTACGGGACTGAGCACGGATAGTTTGGCTGATGCTGGCTATCCTGAAGCTGCTTCACTAGGGGATGCAGTGTGCGGTATGGCGGCTGCAAAAATTAGTTCAAAAGATTTCTTATTCTGGTTTAGGTCCCATGCTGCAAAGGAAATCCAATGGGGGGGAGCCAGGCATCATCCAGAGGATAAGGATGATGGTGGAAGAATGCACCCAAGATCTTCATTTAAAGCATTTCTTGAAGTTGCAAAGTGTAAAAGTTTACCGTGGGAAGTTCATGAAATAAATGTCATTCATTCATCGCAGCTTATTATGAGGGAGTCTTTTTCGAACTCTGGGGACAGTGATATAAAGACAGAAATGTCAGCCCAGCGGAGTGAATCTGAGGTCCAGGATATTAACGAACTCAGTACAGTCGCCTGCGAAATGGTTAGGTTGATTGAAACAGCAACCATTCCAATTTTGGGTGTCGACTCAACTGGTGTGATAAATGGATGGAATGCTAAAATTTCTGAACTTGTAGGATTACAAACTAGTGAAGCTTTGGGGAGATCTTTGGTTAAGGAAATCGTTCATGAAGATTCACGTGGAACCGCTGAAGATTTTCTTTTTCATGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTGAAACTGAGAAGCTTTGGAACTGATAAAGAAAACTCTACCATTTATATTGTAGTTAATGCTTGCACAAGTAGGGATTACACGAAAAAAATTGTCGGGGTCTGCCTTGTTGGGAAAGATGTTACATCTGAGAAGGGTGTGATGGATAAATTTATCCGTCTGCAAGGAGATTATAAGACTATTATTGAAAGTCTGAGTCCATTAATTCCACCAATATTTGCTTCGGACGAGAATGGTTATTGCTGTGAATGGACTGCAGCCATGGAAAAACTTTCTGGTTGGAGGAAAGATGAAGTTATAGGAAAAATGCTAGCAGGGGAGATCTTTGGGAATTTCTGTAGGCTGAAAGGTCTGGATACCCTCACTAGGTTTATGATCCTACTATATCAAGGTGTTGGTGGTGAAGAAACCGAGAGGTTTCCGTTAGGATTTTTCGATAAGGATGGGAACTATGTGGAGGTACTGTTAGCTTCAAACAAGAGGACTGATGCCGAAGGAAATGCCATTGGTTGTATCTGCTTCCTACAAATTGTTGAGCCTAACTCGCAAGGGGTCTCTGAAGGACTTGGGCTAGGCAACAGAGAAGGCAATTTGCAGCTTAAGGAGTTGACTTACATAAAACAGGAGATGAAGAATCCTTTAAATGGCATCAGATTTACTCATGAGCTCCTTGTAAACTCTGGCATGACAGAAAACCAGAAACTCTTCCTCGATACTAGTGACGCATGCGAGAAACAAATCAAGACTATCATAGAGGATATGGACTTCAAAAGTTTAGAAGGAGGGTAA 2856 44.47 MNRSGERGAMAVSSSADSNMRARPSNTASTGNRTAALVQYNADAGLLNRFEQSDASGESFNYSRSVLEAPQSVPEEQISVYLSRIQRGGFVQSFGCLLAIDESSFKIISYSENCFELLGLNDQFESAQGKGLIGIDMRALFTPSSGASLAKAASSREISLLNPVWVHSRANQKPFYAIMHRIDVGIVIDLEPARSGDPALSIAGAVQSQKLAVRAISRLQALPAADIGVLCDTVVENVQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRVRIICDCDAKPVRVIQSDELEQPLCLVNSTLRSPHSCHLQYMTNMGSLSSLVMAVTMNSDDSSTRLWGLVVCHHTSPRYVPFPLRYACEFLMQAFGLQLYMDLQLSLQLTEKKVLKTQTLLCDMLLRGSPFALLTQSPSIKDLVKCDGAALYYNGACCLLGVTPTEAQVKDLAEWVLNNHGDSTGLSTDSLADAGYPEAASLGDAVCGMAAAKISSKDFLFWFRSHAAKEIQWGGARHHPEDKDDGGRMHPRSSFKAFLEVAKCKSLPWEVHEINVIHSSQLIMRESFSNSGDSDIKTEMSAQRSESEVQDINELSTVACEMVRLIETATIPILGVDSTGVINGWNAKISELVGLQTSEALGRSLVKEIVHEDSRGTAEDFLFHALQGKEDKNVELKLRSFGTDKENSTIYIVVNACTSRDYTKKIVGVCLVGKDVTSEKGVMDKFIRLQGDYKTIIESLSPLIPPIFASDENGYCCEWTAAMEKLSGWRKDEVIGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGVGGEETERFPLGFFDKDGNYVEVLLASNKRTDAEGNAIGCICFLQIVEPNSQGVSEGLGLGNREGNLQLKELTYIKQEMKNPLNGIRFTHELLVNSGMTENQKLFLDTSDACEKQIKTIIEDMDFKSLEGG 951
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16527215 16533400 - Sed0026665.2 Sed01g2202 701506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2202 951 SUPERFAMILY GAF domain-like 206 393 - -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 862 IPR035965 -
Sed01g2202 951 Gene3D - 402 573 IPR043150 -
Sed01g2202 951 SMART HisKA_10 887 951 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 MobiDBLite consensus disorder prediction 1 34 - -
Sed01g2202 951 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Sed01g2202 951 MobiDBLite consensus disorder prediction 7 34 - -
Sed01g2202 951 Pfam His Kinase A (phospho-acceptor) domain 890 951 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 Gene3D PAS domain 613 734 - -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 195 IPR035965 -
Sed01g2202 951 ProSiteProfiles PAS repeat profile. 612 683 IPR000014 -
Sed01g2202 951 SMART pas_2 745 815 IPR000014 -
Sed01g2202 951 SMART pas_2 614 681 IPR000014 -
Sed01g2202 951 Gene3D - 207 558 IPR029016 -
Sed01g2202 951 SUPERFAMILY PYP-like sensor domain (PAS domain) 618 726 IPR035965 -
Sed01g2202 951 SUPERFAMILY GAF domain-like 405 581 - -
Sed01g2202 951 Gene3D PAS domain 84 329 - -
Sed01g2202 951 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Sed01g2202 951 NCBIfam PAS domain S-box protein 619 734 IPR000014 -
Sed01g2202 951 PANTHER OS08G0260000 PROTEIN 17 702 - -
Sed01g2202 951 Pfam PAS fold 81 193 IPR013654 GO:0006355(InterPro)
Sed01g2202 951 FunFam Phytochrome 402 531 - -
Sed01g2202 951 FunFam Phytochrome 759 867 - -
Sed01g2202 951 CDD PAS 757 865 IPR000014 -
Sed01g2202 951 Gene3D PAS domain 759 871 - -
Sed01g2202 951 ProSiteProfiles PAC domain profile. 686 742 IPR000700 -
Sed01g2202 951 CDD HisKA 892 943 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Sed01g2202 951 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 387 IPR016132 -
Sed01g2202 951 Pfam Phytochrome region 410 583 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 FunFam Phytochrome 608 740 - -
Sed01g2202 951 Pfam PAS fold 615 730 IPR013767 GO:0006355(InterPro)
Sed01g2202 951 Pfam PAS fold 746 865 IPR013767 GO:0006355(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 634 649 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 512 531 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 615 631 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 427 447 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 PRINTS Phytochrome signature 545 563 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Sed01g2202 951 SMART gaf_1 226 407 IPR003018 GO:0005515(InterPro)
Sed01g2202 951 Pfam GAF domain 227 393 IPR003018 GO:0005515(InterPro)
Sed01g2202 951 CDD PAS 623 730 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2202 Sed-Chr1:16527215 Sed02g1136 Sed-Chr2:48568134 0.00E+00 dispersed
Sed01g2201 Sed-Chr1:16527215 Sed01g2202 Sed-Chr1:16527215 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2202 K12123 - csv:101214900 1623.6