Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2217 ATGCAATGTTCTTGGTTTACAAAGCAATTCTTCAAGCGATTTTTCACAGATGAGCTTGAAATGAAAGGCGGCGTTCAAAGCGCGTTCTTGTCTCCAGATCTCTTGCCTTCCCTTGGCGCTACCATTAATCATTCAACCAATCTTCGTAAACACATTATTTCCCCTTTCAATCCCACTTATCGAGCGTGGAAGATGTGGCTGGTGGTTCTAGTGATTTACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTGTTTTCATCATTGACCAAATAGTCAACGGCTTCTTTGCCATCGATATCTTTTTAACATTTTTCATTGCATATCTCGATCCCGAATCCTATCTTCTTGTCGACGACCACAAAAAAATTGCAGTCAGGTATGTGTCTACTTGGTTTATTTTTGATGTTTGTTCGACTGCGCCATTACAGTCGATCAGTTTCTTGTTCACGAACCAAACCGGAGAAGTTGGATTCAAGCTTCTTAACATGCTTCGACTATGGCGGCTCCGGAGGGTCGGCTCTCTCTTTGCGAGGCTGGAAAAGGACATCCGGTTCAATTATTTTTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGATGCTTCAATTTCGTAATTGCAGACAAATATCCAGACTCAAAACGAACATGGATTGGTGCAGTGAACACAAATTTCAAGGAAGATAGTGTGTGTAACCTTTATATCACTTCAATTTACTGGTCTATTACAACCTTAACTACCACGGGCTATGGCGATCTTCATGCTGAGAACCCAGGAGAAATGTTGTTTGATATATTTTACATGCTCTTCAATTTGGGTTTGACCTCTTATCTCATTGGCAACATGACGAATCTTGTCGTTCATTGGACAAGTCGTACCCGTAATTTCAGAGATTCCATTCAAGCTGCAACAGAGTTTGCATCGAGAAACCAGTTACCCAACCGAATACAAGATCAAATGTTGTCACACATATGTCTCAAGTTTCGAACGGAGGGGCTAAAGCAGCAAGACACATTGAACGACCTTCCAAAAGCCATCAGAGCCTCCATTGCTCAGTATCTCTTTTATCCTATTGTTCACAAGGCTTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTATCAGATGTGGAGGCTGAATACTTCCCACCGAAAGAAGATGTAATACTACAAAATGAGGCTCAAACAGATCTCTATATTTTGGTCTCAGGCAGTATTGATATAATATCCAACATCGATGGTCATGATCAAGTTATGAGACGAGCAATAGCAGGAGACATGTTTGGAGAATTTGGTGTGTTATGTCAAAAGTCACAACCTTTCACAATAAGAACCACAAATCTTTCTCAATTATTGAGGGTTAAGAGAACTTGCTTGATGTATATTATTGAATCAAATTCAGAAGATGGAAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATGGGAGACATTTGGAGTGATGGTGTGCAAAAGAAACTTGAAAATCATTTTAATGATGATACTATGGAACTACAAGAATTTGGAAAGCAAATTCGAAACGAAAACGTTCGAAGTTTAGATGAACATCGAATTGAGTTTGATGAGCTAATTGAAGAAGAAGGAATTGAAAAAGACATATTTTTTTCTCAAAACAAACAAAGAAGAAATTCGCCAACAAACTCTTATTTGAATGTGTTTAAACAGATCAACAAAAGGGTTACAGTACATATGGAGCCTCGTGATGGAAGCAAGGTTATAAGCCCATACGGAAAGTTATTGCATCTTCCGAGTTCGTTAGAAGAACTATGCAAAATTGCAGGTGAAAAGTTTGGAATGGAAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATAATTATATACAAAAATGTGGTCTCCAATGA 2007 38.02 MQCSWFTKQFFKRFFTDELEMKGGVQSAFLSPDLLPSLGATINHSTNLRKHIISPFNPTYRAWKMWLVVLVIYSAWICPFEFAFLPYKQNAVFIIDQIVNGFFAIDIFLTFFIAYLDPESYLLVDDHKKIAVRYVSTWFIFDVCSTAPLQSISFLFTNQTGEVGFKLLNMLRLWRLRRVGSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDSKRTWIGAVNTNFKEDSVCNLYITSIYWSITTLTTTGYGDLHAENPGEMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSIQAATEFASRNQLPNRIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAQYLFYPIVHKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDVILQNEAQTDLYILVSGSIDIISNIDGHDQVMRRAIAGDMFGEFGVLCQKSQPFTIRTTNLSQLLRVKRTCLMYIIESNSEDGNIIMNNFFMKMKEYERMGDIWSDGVQKKLENHFNDDTMELQEFGKQIRNENVRSLDEHRIEFDELIEEEGIEKDIFFSQNKQRRNSPTNSYLNVFKQINKRVTVHMEPRDGSKVISPYGKLLHLPSSLEELCKIAGEKFGMEMPTKVMSADNAEIDDINVIRDGDHLFLLYNNYIQKCGLQ 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16615767 16626237 + Sed0001034.1 Sed01g2217 701521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2217 668 ProSiteProfiles cAMP/cGMP binding motif profile. 378 497 IPR000595 -
Sed01g2217 668 Gene3D Jelly Rolls 372 506 IPR014710 -
Sed01g2217 668 FunFam Potassium channel KAT2 366 502 - -
Sed01g2217 668 Pfam Cyclic nucleotide-binding domain 397 482 IPR000595 -
Sed01g2217 668 Gene3D - 62 301 - -
Sed01g2217 668 PANTHER POTASSIUM CHANNEL AKT1 20 527 IPR045319 GO:0005249(InterPro)|GO:0006813(InterPro)
Sed01g2217 668 Pfam KHA, dimerisation domain of potassium ion channel 587 656 IPR021789 -
Sed01g2217 668 Pfam Ion transport protein 60 307 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2217 668 Gene3D Helix hairpin bin 302 368 - -
Sed01g2217 668 SUPERFAMILY cAMP-binding domain-like 305 494 IPR018490 -
Sed01g2217 668 SUPERFAMILY Voltage-gated potassium channels 55 301 - -
Sed01g2217 668 ProSiteProfiles KHA domain profile. 588 668 IPR021789 -
Sed01g2217 668 CDD CAP_ED 378 491 IPR000595 -
Sed01g2217 668 PRINTS EAG/ELK/ERG potassium channel family signature 96 106 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g2217 668 PRINTS EAG/ELK/ERG potassium channel family signature 274 285 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g2217 668 PRINTS EAG/ELK/ERG potassium channel family signature 292 301 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g2217 668 PRINTS EAG/ELK/ERG potassium channel family signature 248 265 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g2217 668 PRINTS EAG/ELK/ERG potassium channel family signature 73 80 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Sed01g2217 668 SMART cnmp_10 378 495 IPR000595 -
Sed01g2217 668 FunFam Potassium channel KAT3 62 302 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2217 Sed-Chr1:16615767 Sed12g2388 Sed-Chr12:33723683 1.90E-06 dispersed
Sed01g2217 Sed-Chr1:16615767 Sed12g2387 Sed-Chr12:33723683 1.90E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2217 K21867 - csv:101215858 1008.44