Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2217 | ATGCAATGTTCTTGGTTTACAAAGCAATTCTTCAAGCGATTTTTCACAGATGAGCTTGAAATGAAAGGCGGCGTTCAAAGCGCGTTCTTGTCTCCAGATCTCTTGCCTTCCCTTGGCGCTACCATTAATCATTCAACCAATCTTCGTAAACACATTATTTCCCCTTTCAATCCCACTTATCGAGCGTGGAAGATGTGGCTGGTGGTTCTAGTGATTTACTCAGCTTGGATTTGTCCATTCGAATTTGCATTTCTTCCTTACAAGCAAAATGCTGTTTTCATCATTGACCAAATAGTCAACGGCTTCTTTGCCATCGATATCTTTTTAACATTTTTCATTGCATATCTCGATCCCGAATCCTATCTTCTTGTCGACGACCACAAAAAAATTGCAGTCAGGTATGTGTCTACTTGGTTTATTTTTGATGTTTGTTCGACTGCGCCATTACAGTCGATCAGTTTCTTGTTCACGAACCAAACCGGAGAAGTTGGATTCAAGCTTCTTAACATGCTTCGACTATGGCGGCTCCGGAGGGTCGGCTCTCTCTTTGCGAGGCTGGAAAAGGACATCCGGTTCAATTATTTTTGGACCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACATTGTGCTGGATGCTTCAATTTCGTAATTGCAGACAAATATCCAGACTCAAAACGAACATGGATTGGTGCAGTGAACACAAATTTCAAGGAAGATAGTGTGTGTAACCTTTATATCACTTCAATTTACTGGTCTATTACAACCTTAACTACCACGGGCTATGGCGATCTTCATGCTGAGAACCCAGGAGAAATGTTGTTTGATATATTTTACATGCTCTTCAATTTGGGTTTGACCTCTTATCTCATTGGCAACATGACGAATCTTGTCGTTCATTGGACAAGTCGTACCCGTAATTTCAGAGATTCCATTCAAGCTGCAACAGAGTTTGCATCGAGAAACCAGTTACCCAACCGAATACAAGATCAAATGTTGTCACACATATGTCTCAAGTTTCGAACGGAGGGGCTAAAGCAGCAAGACACATTGAACGACCTTCCAAAAGCCATCAGAGCCTCCATTGCTCAGTATCTCTTTTATCCTATTGTTCACAAGGCTTACCTTTTTGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTATCAGATGTGGAGGCTGAATACTTCCCACCGAAAGAAGATGTAATACTACAAAATGAGGCTCAAACAGATCTCTATATTTTGGTCTCAGGCAGTATTGATATAATATCCAACATCGATGGTCATGATCAAGTTATGAGACGAGCAATAGCAGGAGACATGTTTGGAGAATTTGGTGTGTTATGTCAAAAGTCACAACCTTTCACAATAAGAACCACAAATCTTTCTCAATTATTGAGGGTTAAGAGAACTTGCTTGATGTATATTATTGAATCAAATTCAGAAGATGGAAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATGGGAGACATTTGGAGTGATGGTGTGCAAAAGAAACTTGAAAATCATTTTAATGATGATACTATGGAACTACAAGAATTTGGAAAGCAAATTCGAAACGAAAACGTTCGAAGTTTAGATGAACATCGAATTGAGTTTGATGAGCTAATTGAAGAAGAAGGAATTGAAAAAGACATATTTTTTTCTCAAAACAAACAAAGAAGAAATTCGCCAACAAACTCTTATTTGAATGTGTTTAAACAGATCAACAAAAGGGTTACAGTACATATGGAGCCTCGTGATGGAAGCAAGGTTATAAGCCCATACGGAAAGTTATTGCATCTTCCGAGTTCGTTAGAAGAACTATGCAAAATTGCAGGTGAAAAGTTTGGAATGGAAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATAATTATATACAAAAATGTGGTCTCCAATGA | 2007 | 38.02 | MQCSWFTKQFFKRFFTDELEMKGGVQSAFLSPDLLPSLGATINHSTNLRKHIISPFNPTYRAWKMWLVVLVIYSAWICPFEFAFLPYKQNAVFIIDQIVNGFFAIDIFLTFFIAYLDPESYLLVDDHKKIAVRYVSTWFIFDVCSTAPLQSISFLFTNQTGEVGFKLLNMLRLWRLRRVGSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNFVIADKYPDSKRTWIGAVNTNFKEDSVCNLYITSIYWSITTLTTTGYGDLHAENPGEMLFDIFYMLFNLGLTSYLIGNMTNLVVHWTSRTRNFRDSIQAATEFASRNQLPNRIQDQMLSHICLKFRTEGLKQQDTLNDLPKAIRASIAQYLFYPIVHKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDVILQNEAQTDLYILVSGSIDIISNIDGHDQVMRRAIAGDMFGEFGVLCQKSQPFTIRTTNLSQLLRVKRTCLMYIIESNSEDGNIIMNNFFMKMKEYERMGDIWSDGVQKKLENHFNDDTMELQEFGKQIRNENVRSLDEHRIEFDELIEEEGIEKDIFFSQNKQRRNSPTNSYLNVFKQINKRVTVHMEPRDGSKVISPYGKLLHLPSSLEELCKIAGEKFGMEMPTKVMSADNAEIDDINVIRDGDHLFLLYNNYIQKCGLQ | 668 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 16615767 | 16626237 | + | Sed0001034.1 | Sed01g2217 | 701521 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2217 | 668 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 378 | 497 | IPR000595 | - | |
Sed01g2217 | 668 | Gene3D | Jelly Rolls | 372 | 506 | IPR014710 | - | |
Sed01g2217 | 668 | FunFam | Potassium channel KAT2 | 366 | 502 | - | - | |
Sed01g2217 | 668 | Pfam | Cyclic nucleotide-binding domain | 397 | 482 | IPR000595 | - | |
Sed01g2217 | 668 | Gene3D | - | 62 | 301 | - | - | |
Sed01g2217 | 668 | PANTHER | POTASSIUM CHANNEL AKT1 | 20 | 527 | IPR045319 | GO:0005249(InterPro)|GO:0006813(InterPro) | |
Sed01g2217 | 668 | Pfam | KHA, dimerisation domain of potassium ion channel | 587 | 656 | IPR021789 | - | |
Sed01g2217 | 668 | Pfam | Ion transport protein | 60 | 307 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
Sed01g2217 | 668 | Gene3D | Helix hairpin bin | 302 | 368 | - | - | |
Sed01g2217 | 668 | SUPERFAMILY | cAMP-binding domain-like | 305 | 494 | IPR018490 | - | |
Sed01g2217 | 668 | SUPERFAMILY | Voltage-gated potassium channels | 55 | 301 | - | - | |
Sed01g2217 | 668 | ProSiteProfiles | KHA domain profile. | 588 | 668 | IPR021789 | - | |
Sed01g2217 | 668 | CDD | CAP_ED | 378 | 491 | IPR000595 | - | |
Sed01g2217 | 668 | PRINTS | EAG/ELK/ERG potassium channel family signature | 96 | 106 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed01g2217 | 668 | PRINTS | EAG/ELK/ERG potassium channel family signature | 274 | 285 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed01g2217 | 668 | PRINTS | EAG/ELK/ERG potassium channel family signature | 292 | 301 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed01g2217 | 668 | PRINTS | EAG/ELK/ERG potassium channel family signature | 248 | 265 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed01g2217 | 668 | PRINTS | EAG/ELK/ERG potassium channel family signature | 73 | 80 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
Sed01g2217 | 668 | SMART | cnmp_10 | 378 | 495 | IPR000595 | - | |
Sed01g2217 | 668 | FunFam | Potassium channel KAT3 | 62 | 302 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2217 | Sed-Chr1:16615767 | Sed12g2388 | Sed-Chr12:33723683 | 1.90E-06 | dispersed | |
Sed01g2217 | Sed-Chr1:16615767 | Sed12g2387 | Sed-Chr12:33723683 | 1.90E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2217 | K21867 | - | csv:101215858 | 1008.44 |