Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2226 ATGGCGGCTTCGACAATGGCTCTATCGTCGTCCTCGCTGGCCGGAAAGGCGGTGAAACTCAAGCCCTCCTCCCCCGAGCTTTTGGGCAATGGCAGAGTCAGCATGAGGAAATCCTCTTCCAAGTCCGTTTCTTCTGGGAGCCCCTGGTACGGAGCCGATCGGGTTAAGTACTTGGGCCCATTGTCTGGCGAGTCGCCGTCCTACCTCACTGGGGAGTTTCCGGGTGACTACGGCTGGGATACAGCTGGACTTTCCGCTGATCCCGAGACCTTCGCCAAGAACCGTGAGCTCGAAGTCATTCACTCCAGGTGGGCTATGCTTGGAGCTCTTGGCTGTGTCTTTCCTGAGCTTTTGTCGCGCAATGGCGTGAAGTTTGGAGAAGCGGTTTGGTTCAAGGCTGGTTCTCAAATCTTCAGTGAAGGCGGGCTCGACTATTTGGGGAACCCGAGCTTGGTCCACGCCCAAAGCATTCTTGCCATTTGGGCCACACAAGTGGTTTTGATGGGCGCGGTTGAGGGGTACCGTATTGCTGGAGGCCCACTGGGGGAGATAACCGACCCGATATACCCGGGTGGGAGTTTTGACCCGTTGGGGCTGGCCGATGACCCGGAGGCCTTTGCAGAGCTGAAGGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCCATGTTTGGTTTCTTTGTTCAAGCCATTGTCACCGGCAAAGGGCCGTTGGAGAATCTGGCCGATCACCTTGCTGACCCAGTCAACAACAATGCCTGGTCATATGCAACCAACTTTGTTCCTGGAAAATGA 798 55.51 MAASTMALSSSSLAGKAVKLKPSSPELLGNGRVSMRKSSSKSVSSGSPWYGADRVKYLGPLSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 16699408 16700555 - Sed0009915.1 Sed01g2226 701530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2226 265 MobiDBLite consensus disorder prediction 1 47 - -
Sed01g2226 265 MobiDBLite consensus disorder prediction 33 47 - -
Sed01g2226 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 4 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Sed01g2226 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Sed01g2226 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
Sed01g2226 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Sed01g2226 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2226 Sed-Chr1:16699408 Sed10g0157 Sed-Chr10:965751 1.50E-140 dispersed
Sed01g2226 Sed-Chr1:16699408 Sed10g0155 Sed-Chr10:959200 2.00E-140 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2226 K08912 - rcu:8264152 508.064