Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2261 ATGGCTGGAGGTAGAAGAAGAAAGAAGCAGCATTTCAGAAGGATTCATGCCTTTTCTTGTGGGAAAGCTTCATTCAAAGATGAGCATTCTTTAATTGGAGGGCCTGGATTTTCCAGGGTAGTTTATTGTAATGATCCAGATAGTTTTGATGCTAGTCTTTTCAATTATGGGGGCAATTATGTCAAAACTTCAAAGTATACCATTGCTTCATTCTTTCCTAAATCCTTGTTTGAGCAATTCAGAAGGGTGGCCAATTTGTTTTTCCTCCTTTGTGCTTTGCTTTCCTTTAGCCCTCTTTCGCCGTATTCGCCGGTCAGTAATGTTCTTCCTCTTGTTGTTGTTATTGGAGCCACCATGGCCAAAGAGGCTCTTGAAGATTGGAAGAGAACCAAACAGGATATGGAAATGAATAACAGGGAGGTGAAAGTTCATATTCGAGATGGCGAATTTGTCGAAACTAAATGGATGGACTTGAAAGTTGGAGATGTAGTTAAGGTGGAGAAGGATGAATTCTTCCCTGCTGATCTCATTTTACTTTCGTCGAGTTACGAGGAAGCGATTTGCTATGTCGAGACGATGAATCTCGATGGGGAAACCAATTTGAAATTGAAAAATGCATTAGAATCAAGCTCGAACTTGCACGAAGATTCAAGTTTCCAGAATTTCAAGGCTGTGATAAAATGTGAAGACCCCAATGCAAATCTGTATTCCTTTGTGGGCACTATGGAGATTGAAGAGCAGCAATACCCTCTCAGCCCTCAGCAGCTTCTCCTTCGAGACTCGAAGCTGCGAAACACGGATTTTATATACGGGGTGGTGATCTTCACAGGTCATGATACAAAGGTTATGCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAGAAGAGGATGGATAGGATTGTGTTCTTCCTGTTTGCTTTATTGCTTTTGATATCAATTGCCGGGTCGATTATCTTTGGAGTTTCAACTAAGGACGATATTGAGAATGGAAAAACTACGAGATGGTACCTTAGGCCGGATGATACAACAATCTATTACAACCCCAAAAATGCTACAGCTGCAGCAATATTGCAATTTTTTACATCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATAGAGATTGTCAAAGTTATGCAGAGCGCCTTTATCAACCAAGATATACAAATGTACCATGAGGAAACTGACAAGCCAGCTCATGCCCGTACCTCGAATTTGAATGAAGAGCTTGGCCAAATTGGCACCATACTTTCGGATAAAACGGGGACATTGACCTGCAATTCAATGGAATTTATCAAGTGTTCAGTGGGCGGGTCTGCATACGGGCAAGGAGTAACAGAAGTAGAGAGAGCTATGGCAAGAAGAAAGGAGTCAACTTTACCTGAAAATTTAGAGGTCAACAATGCACGTCTTAGCAGCGAAAAACCATCGATTAAGGGGTTCAACTTCACGGATGAAAGAATAATGGATGGTAATTGGGTGAAGGAGCCTCAAGCCGACATAATCCAGAAGTTCTTCCAGCTACTGGCCATCTGCCATACTGCATTGCCAGAAATTGATGAGGAAACTGGAAACATTTCATACGAAGCTGAATCACCAGATGAGGCAGCTTTTGTAATTGCAGCCAGAGAATTTGGCTTTGAATTCTATGAAAGAACTCAGACAAGCATTTCATTGCGGGAGTTCGATCCGGACTCAGCCCAAAAAGTTGAAAGATCATATCAACTACTGGATGTTTTGGAATTTAATAGCACAAGAAAGAGGATGTCTGTGATTGTAAGAAATCCAAAGGGACAGCTATTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGATTGGGAGTAAGTTTGAAGATCAGACAAAGGCGCACATTAACGAGTACGCCGATGCTGGTTTAAGAACTTTGGTGCTCGCGTATCGTGATCTGAAGGAGGAGGAATATAATACATTTCATCAAGAATTCATCAAAGCCAAAAACGCTGTGAGTGCAGATCGCGATGACATAATCGATCAGTTAACAGAAAGCATCGAGAAAGATTTTATTCTTCTTGGTGCTACTGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGTATTGACAAACTTGCACAGGCTGGAATTAAAATATGGGTTCTGACTGGAGACAAAATGGAAACAGCCATCAACATTGGCTTTGCTTGTAGTTTACTTCGACAAGGAATGAGGCAAATAGTGATCAGCTCAGAGACTCCAGAAGGAAAAGCTTTAGACAAAGTCGAAGAAGTTCACAAATCTGCAGCTATCGAGGCGTTTAAGACAAGTGTGGCTCAGCAACTAACCGATGCAAAAGCATTACTTTCGACTTCGAGCAGATCCTTAGAAGCATTGGCTTTGATAATTGATGGAAAGTCCCTCACCTATGCTTTGGAGGATGATGTGAAGGACCTATTTCTGGAGATTGCAATTGGTTGTGCCTCAGTTATATGCTGCAGATCATCTCCAAAGCAGAAAGCACAAGTAACCCAATTGGTTAAGGTTAAAACAGGCGGCACCACTCTGGCAGTTGGTGATGGTGCAAATGATGTCGGAATGCTCCAAGAAGCGGATATCGGGATTGGTATTAGCGGTGTGGAAGGGATGCAGGCAGTCATGTCAAGTGACATTGCAATAGCACAGTTTCGATATTTGGAGCGGCTTCTCCTTGTGCATGGTCATTGGTGTTACAGGAGGATGTCTTCCATGATATGCTATTTCTTCTACAAGAACATTTTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTATTCATCATTTTCCGGCCAATCTGTATACAATGACTGGCTCCTTTCACCGTACAACGTGTTCTTTACTTCTCTTCCTGTGATCGCATTGGGAGTCTTTGATCAAGACGTCTCATCCCGGTACTGTCTCAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAATGTCTTATTTAGTTGGGTTCGAGTTATTGGATGGGTGTTCAACGGGCTACTAAGTTCTATTGTCGTCTTCTTCTTTTGTGTCGGGGCGATGGATCATCAAGCTTTCCGCAACAGCGGGGAGGTCGTTGGGTTGGAAATTCTTGGTGCCACCATGTACACTTGTGTTGTTTGGGTTGTAAACTGTCAAATGGCATTGTCTATCAGTTACTTCACATACATTCAACATCTCTTCATTTGGGGCAGCATCATTATCTGGTACTTATTCCTTATGGCATATGGAGCTATAAACCCAACCCTATCAACCACTGCATTTAAGGTCTTCATCGAGGCGTGCGCCCCGGCACCGTCGTTTTGGATCTTCACACTATTAGCTCTAGGAGCTTCCCTTCTCCCTTACTTCATCTACGCGTCGATCCAAATGCGGTTCTTCCCAATGTATCATCAAATGATTCAATGGATAAAAGAGGACGGGCAGTCAAACGATCCTGAATACTGTCAAGTAGTGAGACAACGATCTCTACGGCACACAACCGTTGGTTACACAGCTCGGTTCGAAGCATCAAAGCATTTTGAAGAAATATCAGAAATGAATATTCATTGA 3591 42.16 MAGGRRRKKQHFRRIHAFSCGKASFKDEHSLIGGPGFSRVVYCNDPDSFDASLFNYGGNYVKTSKYTIASFFPKSLFEQFRRVANLFFLLCALLSFSPLSPYSPVSNVLPLVVVIGATMAKEALEDWKRTKQDMEMNNREVKVHIRDGEFVETKWMDLKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALESSSNLHEDSSFQNFKAVIKCEDPNANLYSFVGTMEIEEQQYPLSPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTAPPSKRSKIEKRMDRIVFFLFALLLLISIAGSIIFGVSTKDDIENGKTTRWYLRPDDTTIYYNPKNATAAAILQFFTSLMLFSYLIPISLYVSIEIVKVMQSAFINQDIQMYHEETDKPAHARTSNLNEELGQIGTILSDKTGTLTCNSMEFIKCSVGGSAYGQGVTEVERAMARRKESTLPENLEVNNARLSSEKPSIKGFNFTDERIMDGNWVKEPQADIIQKFFQLLAICHTALPEIDEETGNISYEAESPDEAAFVIAAREFGFEFYERTQTSISLREFDPDSAQKVERSYQLLDVLEFNSTRKRMSVIVRNPKGQLLLLCKGADSVMFERLAKIGSKFEDQTKAHINEYADAGLRTLVLAYRDLKEEEYNTFHQEFIKAKNAVSADRDDIIDQLTESIEKDFILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQIVISSETPEGKALDKVEEVHKSAAIEAFKTSVAQQLTDAKALLSTSSRSLEALALIIDGKSLTYALEDDVKDLFLEIAIGCASVICCRSSPKQKAQVTQLVKVKTGGTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRMSSMICYFFYKNIFFGFTLFFFELYSSFSGQSVYNDWLLSPYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSIVVFFFCVGAMDHQAFRNSGEVVGLEILGATMYTCVVWVVNCQMALSISYFTYIQHLFIWGSIIIWYLFLMAYGAINPTLSTTAFKVFIEACAPAPSFWIFTLLALGASLLPYFIYASIQMRFFPMYHQMIQWIKEDGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKHFEEISEMNIH 1196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17127065 17132924 + Sed0014307.1 Sed01g2261 701565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2261 1196 Gene3D - 117 287 - -
Sed01g2261 1196 Pfam Cation transport ATPase (P-type) 519 625 - -
Sed01g2261 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 496 664 IPR023299 GO:0000166(InterPro)
Sed01g2261 1196 NCBIfam HAD-IC family P-type ATPase 829 945 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g2261 1196 NCBIfam HAD-IC family P-type ATPase 108 216 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Sed01g2261 1196 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1141 IPR032630 -
Sed01g2261 1196 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 33 1146 - GO:0005886(PANTHER)|GO:0045332(PANTHER)|GO:0140326(PANTHER)
Sed01g2261 1196 SUPERFAMILY HAD-like 420 918 IPR036412 -
Sed01g2261 1196 FunFam Phospholipid-transporting ATPase 539 697 - -
Sed01g2261 1196 FunFam Phospholipid-transporting ATPase 117 287 - -
Sed01g2261 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 51 1141 IPR023298 -
Sed01g2261 1196 SFLD Haloacid Dehalogenase 407 914 - -
Sed01g2261 1196 Gene3D - 542 696 IPR023299 GO:0000166(InterPro)
Sed01g2261 1196 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Sed01g2261 1196 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Sed01g2261 1196 Coils Coil 117 137 - -
Sed01g2261 1196 SUPERFAMILY Calcium ATPase, transduction domain A 143 285 IPR008250 -
Sed01g2261 1196 Gene3D - 697 903 IPR023214 -
Sed01g2261 1196 SFLD p-type atpase 407 914 IPR044492 -
Sed01g2261 1196 FunFam Phospholipid-transporting ATPase 697 903 - -
Sed01g2261 1196 CDD P-type_ATPase_APLT_Dnf-like 58 1023 - -
Sed01g2261 1196 Pfam Phospholipid-translocating ATPase N-terminal 41 107 IPR032631 -
Sed01g2261 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Sed01g2261 1196 NCBIfam phospholipid-translocating P-type ATPase 56 1148 IPR006539 GO:0000287(InterPro)|GO:0005524(InterPro)|GO:0015914(InterPro)|GO:0016020(InterPro)|GO:0140326(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2261 Sed-Chr1:17127065 Sed07g1972 Sed-Chr7:34517103 0.00E+00 dispersed
Sed01g2261 Sed-Chr1:17127065 Sed08g2156 Sed-Chr8:35485619 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2261 K01530 - csv:101209427 2102.79