Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2262 ATGGCGATGAAGCTGGCCGCCATCACAGCTTCCGCCATTCCCCGGCACTGTCTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTCACAGATCTGATTCCAAATCCCAATTCCGTCCCATCTCCGTCGCCCTTCCGGCCTCCACCTCCCTCTCTCTATTTGCCCTAATTTCCCCTCCCTTCGAAGCTACGGCTCTCACCAAAGACCAAATCATCTCCTCTCTCGACGATGTGGAGAAGACGTTCGACCAGGTTCAAGAAGCGGGTTCCAGTTTCTTTGATATCGCTCAGCGCCTCATTGCCTCTGCCAAAGATGTTTTGAAGCCGGCCGTTGATGCGGCGCTGCCCATTGTCAAGCAGGCTGGTGAGGAGGCGCTCAAGGTTGCTTCTCCCACCATTTCGGAGGCTTCTAAGAAAGCCCTTCAAGCTCTACAGGGCTCTGGTATTGACACTGAGCCCGTTCTCACTGCTGCTAAGACAGTGGTAGGTGCAGCTCAACAAACAGGTAAGGTCATTGAAGGTGCCAAGCCTATAGCCTCATCGACTGTCGAGACGATCTCTACAGCCGACCCTCTTTTAATTGCAGAAGTTGCTGGAGTCTTAGCCTTAGCCTACCTGCTTTTTCCTCCAATTTGGTCTGCCATCTCTTTCAACTTTCGTGGCTACAAAGGTGAACTCTCTCCTGCTCAAACACTTGATCTAATTTCGTCGAGCAATTACTTTCTGATTGATATACGATCTGAGAAAGACAAGGATAAGTCTGGCATTCCTCGCCTTCCTTCTAGTGCTAAGAATCAGTCGATTGCCATTCCTTTAGAAGAAGTACCGAGCAAGTTGCGGGGCATTGTCCGAAACGTAAAGAAACTAGAAGCTGAACTTTCAGCCATCAAGATTTCATTTCTCAAGAAACTTAACAAAGGCTCCAATATAGTGATCTTGGGCTCATACACAGACTCAGCAAAATCAGTTGCCAAAGCACTAACAAGCCTTGGCTTCAAGAACTCCTGGATTGTAACCGATGGGTTTTTAGGTAGCAAAGGATGGTTGCAGAGTCGGTTAGGAACGGATACATATAAGTTCTCATTCGCTGAAATCCTTTCGCCATCACGAGTCATCCCAGCATCAACCAAACGTTTTGGGACGACGTCAGTGACAACTGTATCTGGTCAAAAGTTGCTTCCTGGTTCTGAATAA 1194 48.07 MAMKLAAITASAIPRHCLPSSSSSSSSSSHRSDSKSQFRPISVALPASTSLSLFALISPPFEATALTKDQIISSLDDVEKTFDQVQEAGSSFFDIAQRLIASAKDVLKPAVDAALPIVKQAGEEALKVASPTISEASKKALQALQGSGIDTEPVLTAAKTVVGAAQQTGKVIEGAKPIASSTVETISTADPLLIAEVAGVLALAYLLFPPIWSAISFNFRGYKGELSPAQTLDLISSSNYFLIDIRSEKDKDKSGIPRLPSSAKNQSIAIPLEEVPSKLRGIVRNVKKLEAELSAIKISFLKKLNKGSNIVILGSYTDSAKSVAKALTSLGFKNSWIVTDGFLGSKGWLQSRLGTDTYKFSFAEILSPSRVIPASTKRFGTTSVTTVSGQKLLPGSE 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17135832 17141432 + Sed0014753.1 Sed01g2262 701566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2262 397 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 225 344 IPR036873 -
Sed01g2262 397 ProSiteProfiles Rhodanese domain profile. 236 357 IPR001763 -
Sed01g2262 397 Gene3D - 223 362 IPR036873 -
Sed01g2262 397 PANTHER RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN 57 355 IPR044690 GO:0009704(InterPro)|GO:0071277(InterPro)|GO:0090333(InterPro)
Sed01g2262 397 CDD RHOD 230 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2262 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g389 . . . . . . . . Cmo13g01091 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00153 Csa01g00637 Chy12g01465 Cme12g01908 . . . Bda14g00903 . Bpe15g00555 . . Sed01g2262 . . Cma13g01050 . Car13g00883 . Cpe09g01146 . Bhi08g01041 Tan05g2307 Cmetu03g1392 Lac10g0201 Hepe07g2429 . . Cla04g01122 Cam04g1175 Cec01g1687 Cco01g1735 Clacu04g1203 Cmu04g1182 Cre01g1480 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed13g0520 . 59 376 Sulfurtransferasese/Rhodanese AT1G79230 74.5 3.9e-143 505.4
Sed13g0520 . 64 323 Sulfurtransferasese/Rhodanese AT1G16460 71.9 9.0e-109 391.0
Sed01g2262 . 39 315 Sulfurtransferasese/Rhodanese AT5G23060 59.8 1.1e-76 284.6
Sed12g0107 . 1 438 Sulfurtransferasese/Rhodanese AT4G01050 53.2 1.3e-111 401.4
Sed12g0108 . 1 373 Sulfurtransferasese/Rhodanese AT4G01050 58.7 1.7e-108 391.0
Sed02g1369 . 2 129 Sulfurtransferasese/Rhodanese AT4G01050 70.8 4.4e-48 190.3
Sed02g0492 . 8 138 Sulfurtransferasese/Rhodanese AT4G01050 69.2 5.8e-48 189.9
Sed12g0819 . 41 151 Sulfurtransferasese/Rhodanese AT4G01050 71.7 8.1e-42 169.5
Sed04g4017 . 5 595 Sulfurtransferasese/Rhodanese AT1G09280 64.2 3.8e-221 765.4
Sed04g4018 . 5 624 Sulfurtransferasese/Rhodanese AT1G09280 61.1 4.8e-216 748.4
Sed04g2971 . 78 429 Sulfurtransferasese/Rhodanese AT2G40760 75.3 2.5e-154 543.1
Sed06g0644 . 83 427 Sulfurtransferasese/Rhodanese AT1G17850 66.9 6.3e-147 518.5
Sed03g2287 . 2 229 Sulfurtransferasese/Rhodanese AT2G42220 67.7 7.4e-83 304.7
Sed04g1161 . 35 215 Sulfurtransferasese/Rhodanese AT3G08920 61.9 3.5e-63 239.2
Sed12g2483 . 42 290 Sulfurtransferasese/Rhodanese AT4G24750 72.3 7.8e-106 381.3
Sed05g1184 . 9 286 Sulfurtransferasese/Rhodanese AT5G19370 55.9 1.1e-83 307.8
Sed07g2150 . 119 470 Sulfurtransferasese/Rhodanese AT5G55130 70.2 1.9e-146 516.5
Sed07g2151 . 119 470 Sulfurtransferasese/Rhodanese AT5G55130 70.2 1.9e-146 516.5
Sed01g2647 . 114 465 Sulfurtransferasese/Rhodanese AT5G55130 69.9 5.6e-146 515.0
Sed07g0876 . 65 237 Sulfurtransferasese/Rhodanese AT4G27700 80.6 4.5e-77 285.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010320 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32