Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2275 ATGAATGTGCCCACTGCGGAACGAGCAGCGCCACCGTTGCCAACTCCAGCTCATAATTATTCTGTGGAGCGTCTTTTACCAGCTGGAGTTGGGACTTACAGTATCAGCCACATTTCTTATTTCAACCAGAGGGTTCCAAAGCCAGAAGGGTCTATATTTTCAGTCACTCAGGCGAGTAATACTGACAAAAGTGACGCCAACTCTCGTTGTAGCTCGTTATCTGGAAGTGGTTTCACGTTATGGGAAGACTCTGCAGTTAAACAGGGAAAGACAAGGAAGGAGAATTTAGGTGAAAAGCCTGGTTTAAGGGTAGAACCACAGGCAAAGATTGAGCAATGGGCCGTTTCAACGGAGCGGCCAACACAATCATCATCAAGCAACCATCGCAACAGCTTCAGTGAGATGTTAAAGTCTGCTGTCAAGGTTTCTACTGAGGAAGAGGAACTGGACGATGGTAAAGCATTTGTTATTAAGAAGGAATCATTGCCATCCACTGCCTATAAAGAGGAATTAGGGATAAATGTCCGTGGAAAATGCTCTGATCAGAAGACTAACACGCCGAGATCCAAACATTCTGCAACAGAACAGCGCCGGAGAAGCAAAATTAATGACAGGTTTCAGAAATTGAGAGAACTTATTCCTCGTAGTGATCAGAAGAGAGACAAGGCATCATTTCTGTCAGAGGTTATCGAGTACATTCAGTTTTTACAAGAAAAGGTTAGCAAGTATGAAAGCTCGCCGCCGCAAGGATGGTACCATGAACCAGAAAAACTAATCCCCTGTAGAAACAATTGTGATCGAGCACAATGTTACATCGATCAATCTCAAGTAGCAAAGAGTGGCCCGGTGTTCATATTTACTGAGTCTGACAAGAAAAACATGTCTCACTCCTGGCACACGCACAACGGAGCAGAATCTGAAGTTAGTACTTCCACCACTTACAGAGAAGTAAATCATCATCCTGGAACAACCAACAAAGCAACATCTTATCCAAAGTTGCAGCCATGCCATTTCATACCTGTCATAAGTGAAGGTGAAAAAACTGCAATTCAATCTCAAATGACGTACAATGCAGACAATAAACCACGTGAGACAAGATCATGTGCTACCATTGCTGCTGTTGGTAATAAGCTGAAAGAACCAGAGCAGCGCATTGAAGGTGGTAGAATTAGCATCTCAAGTGCATATTCTCAAGGGTTGCTAAAAGTTCTCACGCAAGCACTACAGAGTTCTGGAGTGGATATGTCACAGGCCAGCATCGCCGTACAAATAAAACTTGGAAAGAGAACGAATCATAAAGAAACTGCCCCTACACCTGCCATTGTGGTAAACTAG 1335 43.67 MNVPTAERAAPPLPTPAHNYSVERLLPAGVGTYSISHISYFNQRVPKPEGSIFSVTQASNTDKSDANSRCSSLSGSGFTLWEDSAVKQGKTRKENLGEKPGLRVEPQAKIEQWAVSTERPTQSSSSNHRNSFSEMLKSAVKVSTEEEELDDGKAFVIKKESLPSTAYKEELGINVRGKCSDQKTNTPRSKHSATEQRRRSKINDRFQKLRELIPRSDQKRDKASFLSEVIEYIQFLQEKVSKYESSPPQGWYHEPEKLIPCRNNCDRAQCYIDQSQVAKSGPVFIFTESDKKNMSHSWHTHNGAESEVSTSTTYREVNHHPGTTNKATSYPKLQPCHFIPVISEGEKTAIQSQMTYNADNKPRETRSCATIAAVGNKLKEPEQRIEGGRISISSAYSQGLLKVLTQALQSSGVDMSQASIAVQIKLGKRTNHKETAPTPAIVVN 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17195041 17200386 + Sed0008386.8 Sed01g2275 701579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2275 444 SMART finulus 192 242 IPR011598 GO:0046983(InterPro)
Sed01g2275 444 MobiDBLite consensus disorder prediction 183 200 - -
Sed01g2275 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 236 IPR011598 GO:0046983(InterPro)
Sed01g2275 444 CDD bHLH_AtBIM_like 185 262 - -
Sed01g2275 444 Pfam Helix-loop-helix DNA-binding domain 188 237 IPR011598 GO:0046983(InterPro)
Sed01g2275 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 245 IPR036638 GO:0046983(InterPro)
Sed01g2275 444 MobiDBLite consensus disorder prediction 178 200 - -
Sed01g2275 444 Gene3D - 183 249 IPR036638 GO:0046983(InterPro)
Sed01g2275 444 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 15 436 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2275 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2272 Sed-Chr1:17195041 Sed01g2275 Sed-Chr1:17195041 1.10E-251 dispersed
Sed01g2273 Sed-Chr1:17195041 Sed01g2275 Sed-Chr1:17195041 1.10E-251 dispersed
Sed01g2275 Sed-Chr1:17195041 Sed12g2033 Sed-Chr12:31166646 7.20E-95 dispersed
Sed01g2274 Sed-Chr1:17195041 Sed01g2275 Sed-Chr1:17195041 1.10E-250 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g417 . . Bda06g00506 Bda15g00637 Bpe12g00510 . . Bma12g00955 Cmo13g01097 . Cma10g00277 Cma11g00233 Car10g00259 Car11g00210 Sed08g0307 Cpe20g00094 Cpe04g01439 Bhi02g00050 Tan09g1999 Cmetu02g0900 . Hepe09g0297 . . Cla06g01518 Cam06g1675 Cec06g1736 Cco06g1732 Clacu06g1640 Cmu06g1588 Cre06g2399 . . Cone13ag0021 Cone19ag0030 Lsi02g00145 Csa01g00628 Chy12g01472 Cme12g01914 . Blo15g00347 . . Bpe07g00745 . . . Sed01g2275 Cmo10g00294 Cmo11g00236 Cma13g01054 . Car13g00889 . . Cpe18g00723 Bhi08g01049 Tan05g2320 Cmetu12g0108 . . . . Cla04g01132 Cam04g1185 Cec01g1697 Cco01g1743 Clacu04g1212 Cmu04g1191 Cre01g1490 Lsi06g01384 Csa01g00327 Chy02g02415 Cme02g01800
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006116 0 2 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 0 1 1 1 1 1 8 5 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37269 PF00010 HLH 1.50E-16 No_clan Sed TF