Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2282 ATGGGGAGAGGGAGAGTGCAATTAAAGAGGATTGAGAACAAGATTAATAGGCAAGTTACTTTCTCTAAAAGAAGGTCTGGTTTGTTGAAGAAAGCTCATGAAATTTCAGTTCTTTGTGATGCTGAAGTTGCTCTTATTGTCTTCTCCACCAAAGGAAAGCTCTTTGAATACTCCACTGATTCTTGCATGGAGAAAATCCTTGAGCGTTATGAAAGGTATTCATATGCAGAGAGGAGACTTGTTGCAAATGAGAATCAATCAAATGGAAATTGGACCCTTGAACATGCAAAGCTCAAATCAAGAATAGAAGTTCTACAAAAGAACCACAGGCATTTCATGGGGGAAGAACTTGACTCATTGAGTCTAAGAGAGCTTCAAAATGTTGAGCAACAACTTGATTCTGCACTCAAGCATATAAGAGCTAGGAAGAATCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAGAAAGACAAATCCCTACAGGATCAAAACAATATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGAACAAGCTCAAAATCCACCTAGGGGGAAGCAGGAGCAGAATAGCAATGGCATTCAATCTACCCCACTTCTCCTACCTCAGCCATTCCAATCCCTTACCATGAGCTGTCCTTACCCATCCCGTGGCACTGAACACGAAAACGCCCCTGCCAACCACGACAGATCGAGCACACTCCTGCCGCTGTGGATGCTCCGCCACCGCCTTGGTAACTAA 744 42.61 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLVANENQSNGNWTLEHAKLKSRIEVLQKNHRHFMGEELDSLSLRELQNVEQQLDSALKHIRARKNQLMHESISELQKKDKSLQDQNNMLAKKIKEKEKEQAQNPPRGKQEQNSNGIQSTPLLLPQPFQSLTMSCPYPSRGTEHENAPANHDRSSTLLPLWMLRHRLGN 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17231695 17238182 - Sed0005514.1 Sed01g2282 701586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2282 247 Coils Coil 151 181 - -
Sed01g2282 247 MobiDBLite consensus disorder prediction 184 217 - -
Sed01g2282 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 MobiDBLite consensus disorder prediction 174 230 - -
Sed01g2282 247 Pfam K-box region 83 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g2282 247 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g2282 247 Coils Coil 122 145 - -
Sed01g2282 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sed01g2282 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed01g2282 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 188 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g2282 247 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2282 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2282 Sed-Chr1:17231695 Sed04g0084 Sed-Chr4:498590 1.90E-65 dispersed
Sed03g2263 Sed-Chr3:17043008 Sed01g2282 Sed-Chr1:17231695 1.60E-24 dispersed
Sed01g2282 Sed-Chr1:17231695 Sed01g2283 Sed-Chr1:17245779 5.70E-41 tandem
Sed01g2282 Sed-Chr1:17231695 Sed06g0875 Sed-Chr6:10318157 1.80E-39 wgd
Sed01g2282 Sed-Chr1:17231695 Sed08g2135 Sed-Chr8:35345567 6.30E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37270 PF01486 K-box 5.00E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2282 K09264 - csv:101207225 389.808