Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2283 ATGGGAAGAGGGAGAGTTGAATTGAAGAGAATTGAGAACAAAATTAACAGGCAGGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTAACCGTGGCAAGCTCTTTGAGTTCTCTAGTGCTTCTAGCATGACTAAGACGCTCGAGAAGTATCGAAAGTGCAGCTACGGTATACTCGAGGCCACTCGCCATGTAAATGAGAATTTGCCACATAACTTTGATGATTATTTGAATCTAAAAGCAACTGTTGAAATCATGCAGCAATCTCAGAGAAACCTTTTGGGGGAAGATTTAGGGGTATTGAATTCCAAGGAACTTGAGCAACTTGAACAACAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACAAACCCTACTTGACCAGCTTTCACAACTTCAACACAAGGAACACATGCTTGTTGAAGACAACAAAGGTTTAAGAAAGAAGCTGGAAGAAAGCAGTGCACAAGTGGCGGCAGCCACGGCGGCGTGGGGGTGGGAAGGCGGCGCCGGAGGGCAGAGCATGGAATATCCCAGCCGCATAGCCTCACAATCAGAGACATTTTTCCACCCCATTATTCATCCAAATCCCACTTTACAAATTGGGTACAATTCTGTTGGCTCACTTGGATTGAACAATAATAATAATAACAACAATGTTGGACCTCCATCCCAAAATGCCAATGGATTTCATCTTGGCTGGATGCTTTAA 777 43.63 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSSASSMTKTLEKYRKCSYGILEATRHVNENLPHNFDDYLNLKATVEIMQQSQRNLLGEDLGVLNSKELEQLEQQLETSLERIRSTKTQTLLDQLSQLQHKEHMLVEDNKGLRKKLEESSAQVAAATAAWGWEGGAGGQSMEYPSRIASQSETFFHPIIHPNPTLQIGYNSVGSLGLNNNNNNNNVGPPSQNANGFHLGWML 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17245779 17250940 - Sed0021668.1 Sed01g2283 701587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2283 258 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 FunFam MADS-box transcription factor 1 13 86 - -
Sed01g2283 258 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 Pfam K-box region 93 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g2283 258 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 201 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed01g2283 258 Gene3D - 13 81 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed01g2283 258 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 Coils Coil 165 185 - -
Sed01g2283 258 Coils Coil 122 145 - -
Sed01g2283 258 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed01g2283 258 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2283 Sed-Chr1:17245779 Sed06g0875 Sed-Chr6:10318157 7.90E-70 dispersed
Sed01g2282 Sed-Chr1:17231695 Sed01g2283 Sed-Chr1:17245779 5.70E-41 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37271 PF01486 K-box 2.60E-24 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2283 K09264 - csv:101204197 368.237