Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed01g2286 | ATGTCTTTAGAACACCACTTTCTGTTCCTTCCCTCATTTGGGATGGCCTCAACAATGACAAATCTCAACTTCCTGTTCTGTTTCCTTCTCTTCGTCGCCGTCTTCGGCCTTTGCCTCGGCCCGGGCGGTCTAGCCTGGGCTTTGGTTTCAAGGCCAAGAAACAAACCCATCATTCCCGGCCCTAGTGGCACTCCTTTTCTAGGTCAAGTTTCAACCTTTACGTCTTCCCTCGCTCATAGAACTCTCGCTAAGCTCGCCACGACCTTAAAGGCGAAACCTTTGATGTCGTTCTCGGTTGGGTTCACTCGGTTCGTCATTTCTAGCAACCCCGTCACTGCCAAAGAGCTTTTGAACAGCTCGGCTTTCGCCGATCGTCCTGTTAAGGAGTCGGCTTACGAGCTTATGTTTCATAGAGCAATGGGGTTTGCTCCATATGGAGAGTATTGGAGGAACCTTAGGAGAATCTCATCCACTCATTTGTTTAGTCCCAAAAGGATTTCAAGTTTTGGGGAGTTGAGAGGGAGAATTGGGGTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAAAATGGGGAAGTTGAAGTGAGGAAGGTTTTGCATTTTGGGTCATTGAATAATGTGATGGGAAGTGTTTTTGGGAAAAGTAGTTATGAGTTTGGTAGTGAAAGTGAGCTTGAGGGATTGGTGAGTGAAGGGTATGAGTTGCTTGGGAGTTTTAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGCAAACTTTTGGTGGGGAAAGTGAATGTTTTTGTTGGGAAAATCATAGAGGAGCATAGAATGAATAGAAAAATTGTCAAAGAAAATAGCCAAGAAGGGCCTATTATTGTTCATGATAATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCAATGACTCTGATATGATTGCAGTGCTGTGGGAGATGATCTTTAGAGGAACTGATACAGTGGCAATTCTCCTAGAATGGATTGTAGCAAGAATGGTTCTTCATCCCAACATTCAAACAAAACTCCAATCCGAAATTGACCGAGTCATTAAAACCGGCCGAACCGTTTCCGACTCGGACCTTCCAAATCTCCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCTCCCGGTCCACTCCTCTCATGGGCCCGCCTCGCCATCCACGACACCCACGTCGGCGGCCACTTCATTCCCGCTGGCACGACGGCCATGGTCAACATGTGGGCCATAACCCACGACAACCAAATCTGGCCCGACCCGACTTCATTCGACCCCGAGCGATTTATAAACGATGATATGGCAATAATGGGGTCTGACTTAAGGCTGGCACCGTTCGGGTCCGGAAGAAGAGTATGCCCTGGCAAAGCCATGGGGCTAGCCACGGTCGAGCTGTGGCTCGCTCAATTGGTTCAGAGCTTCGAATGGGTTCGGGTGGAAGGTGGGGTGGACTTGTCTGAGTCTTTGAAGCTTTCACTGGAAATGGAACAACCCTTGATGTGTAGGGCTGTTCCTAGAGTTGTAGGGTTGGGGTCTCAGCCATGA | 1608 | 47.39 | MSLEHHFLFLPSFGMASTMTNLNFLFCFLLFVAVFGLCLGPGGLAWALVSRPRNKPIIPGPSGTPFLGQVSTFTSSLAHRTLAKLATTLKAKPLMSFSVGFTRFVISSNPVTAKELLNSSAFADRPVKESAYELMFHRAMGFAPYGEYWRNLRRISSTHLFSPKRISSFGELRGRIGVQMVEEIKGLMEKNGEVEVRKVLHFGSLNNVMGSVFGKSSYEFGSESELEGLVSEGYELLGSFNWSDHFPLLGWLDLQGVRKRCKLLVGKVNVFVGKIIEEHRMNRKIVKENSQEGPIIVHDNNEDGDFVDVLLDLEKENKLNDSDMIAVLWEMIFRGTDTVAILLEWIVARMVLHPNIQTKLQSEIDRVIKTGRTVSDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFIPAGTTAMVNMWAITHDNQIWPDPTSFDPERFINDDMAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVQSFEWVRVEGGVDLSESLKLSLEMEQPLMCRAVPRVVGLGSQP | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 17299618 | 17302441 | - | Sed0005757.1 | Sed01g2286 | 701590 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed01g2286 | 535 | Gene3D | Cytochrome P450 | 47 | 525 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | FunFam | Cytochrome P450 78A5 | 50 | 527 | - | - | |
| Sed01g2286 | 535 | SUPERFAMILY | Cytochrome P450 | 58 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 467 | 476 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed01g2286 | 535 | PRINTS | P450 superfamily signature | 334 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | P450 superfamily signature | 465 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | Pfam | Cytochrome P450 | 59 | 501 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 323 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 464 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 474 | 497 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 428 | 452 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 343 | 369 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | PRINTS | E-class P450 group I signature | 386 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed01g2286 | 535 | CDD | CYP78 | 90 | 520 | - | - | |
| Sed01g2286 | 535 | PANTHER | CYTOCHROME P450 78A7-RELATED | 8 | 524 | IPR051996 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g2286 | Sed-Chr1:17299618 | Sed03g2560 | Sed-Chr3:40912196 | 1.90E-187 | dispersed | |
| Sed06g1750 | Sed-Chr6:42217602 | Sed01g2286 | Sed-Chr1:17299618 | 1.80E-155 | transposed | |
| Sed09g0579 | Sed-Chr9:6589623 | Sed01g2286 | Sed-Chr1:17299618 | 7.70E-136 | transposed | |
| Sed01g2286 | Sed-Chr1:17299618 | Sed08g2131 | Sed-Chr8:35279533 | 3.80E-284 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed01g2286 | K20619 | - | csv:101203458 | 796.964 |