Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2286 ATGTCTTTAGAACACCACTTTCTGTTCCTTCCCTCATTTGGGATGGCCTCAACAATGACAAATCTCAACTTCCTGTTCTGTTTCCTTCTCTTCGTCGCCGTCTTCGGCCTTTGCCTCGGCCCGGGCGGTCTAGCCTGGGCTTTGGTTTCAAGGCCAAGAAACAAACCCATCATTCCCGGCCCTAGTGGCACTCCTTTTCTAGGTCAAGTTTCAACCTTTACGTCTTCCCTCGCTCATAGAACTCTCGCTAAGCTCGCCACGACCTTAAAGGCGAAACCTTTGATGTCGTTCTCGGTTGGGTTCACTCGGTTCGTCATTTCTAGCAACCCCGTCACTGCCAAAGAGCTTTTGAACAGCTCGGCTTTCGCCGATCGTCCTGTTAAGGAGTCGGCTTACGAGCTTATGTTTCATAGAGCAATGGGGTTTGCTCCATATGGAGAGTATTGGAGGAACCTTAGGAGAATCTCATCCACTCATTTGTTTAGTCCCAAAAGGATTTCAAGTTTTGGGGAGTTGAGAGGGAGAATTGGGGTTCAAATGGTGGAGGAAATCAAGGGTTTGATGGAGAAAAATGGGGAAGTTGAAGTGAGGAAGGTTTTGCATTTTGGGTCATTGAATAATGTGATGGGAAGTGTTTTTGGGAAAAGTAGTTATGAGTTTGGTAGTGAAAGTGAGCTTGAGGGATTGGTGAGTGAAGGGTATGAGTTGCTTGGGAGTTTTAATTGGAGTGATCACTTTCCTCTTTTGGGTTGGTTGGATTTGCAAGGTGTGAGAAAAAGGTGCAAACTTTTGGTGGGGAAAGTGAATGTTTTTGTTGGGAAAATCATAGAGGAGCATAGAATGAATAGAAAAATTGTCAAAGAAAATAGCCAAGAAGGGCCTATTATTGTTCATGATAATAATGAAGATGGAGATTTTGTTGATGTGTTGCTTGATTTGGAAAAGGAAAACAAACTCAATGACTCTGATATGATTGCAGTGCTGTGGGAGATGATCTTTAGAGGAACTGATACAGTGGCAATTCTCCTAGAATGGATTGTAGCAAGAATGGTTCTTCATCCCAACATTCAAACAAAACTCCAATCCGAAATTGACCGAGTCATTAAAACCGGCCGAACCGTTTCCGACTCGGACCTTCCAAATCTCCCTTATCTCCATGCAGTCGTCAAAGAGACTCTAAGAATGCACCCTCCCGGTCCACTCCTCTCATGGGCCCGCCTCGCCATCCACGACACCCACGTCGGCGGCCACTTCATTCCCGCTGGCACGACGGCCATGGTCAACATGTGGGCCATAACCCACGACAACCAAATCTGGCCCGACCCGACTTCATTCGACCCCGAGCGATTTATAAACGATGATATGGCAATAATGGGGTCTGACTTAAGGCTGGCACCGTTCGGGTCCGGAAGAAGAGTATGCCCTGGCAAAGCCATGGGGCTAGCCACGGTCGAGCTGTGGCTCGCTCAATTGGTTCAGAGCTTCGAATGGGTTCGGGTGGAAGGTGGGGTGGACTTGTCTGAGTCTTTGAAGCTTTCACTGGAAATGGAACAACCCTTGATGTGTAGGGCTGTTCCTAGAGTTGTAGGGTTGGGGTCTCAGCCATGA 1608 47.39 MSLEHHFLFLPSFGMASTMTNLNFLFCFLLFVAVFGLCLGPGGLAWALVSRPRNKPIIPGPSGTPFLGQVSTFTSSLAHRTLAKLATTLKAKPLMSFSVGFTRFVISSNPVTAKELLNSSAFADRPVKESAYELMFHRAMGFAPYGEYWRNLRRISSTHLFSPKRISSFGELRGRIGVQMVEEIKGLMEKNGEVEVRKVLHFGSLNNVMGSVFGKSSYEFGSESELEGLVSEGYELLGSFNWSDHFPLLGWLDLQGVRKRCKLLVGKVNVFVGKIIEEHRMNRKIVKENSQEGPIIVHDNNEDGDFVDVLLDLEKENKLNDSDMIAVLWEMIFRGTDTVAILLEWIVARMVLHPNIQTKLQSEIDRVIKTGRTVSDSDLPNLPYLHAVVKETLRMHPPGPLLSWARLAIHDTHVGGHFIPAGTTAMVNMWAITHDNQIWPDPTSFDPERFINDDMAIMGSDLRLAPFGSGRRVCPGKAMGLATVELWLAQLVQSFEWVRVEGGVDLSESLKLSLEMEQPLMCRAVPRVVGLGSQP 535
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 17299618 17302441 - Sed0005757.1 Sed01g2286 701590
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2286 535 Gene3D Cytochrome P450 47 525 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 FunFam Cytochrome P450 78A5 50 527 - -
Sed01g2286 535 SUPERFAMILY Cytochrome P450 58 527 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 467 476 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed01g2286 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS P450 superfamily signature 387 398 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS P450 superfamily signature 465 474 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 Pfam Cytochrome P450 59 501 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 464 474 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 474 497 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 428 452 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 PRINTS E-class P450 group I signature 386 404 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed01g2286 535 CDD CYP78 90 520 - -
Sed01g2286 535 PANTHER CYTOCHROME P450 78A7-RELATED 8 524 IPR051996 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2286 Sed-Chr1:17299618 Sed03g2560 Sed-Chr3:40912196 1.90E-187 dispersed
Sed06g1750 Sed-Chr6:42217602 Sed01g2286 Sed-Chr1:17299618 1.80E-155 transposed
Sed09g0579 Sed-Chr9:6589623 Sed01g2286 Sed-Chr1:17299618 7.70E-136 transposed
Sed01g2286 Sed-Chr1:17299618 Sed08g2131 Sed-Chr8:35279533 3.80E-284 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2286 K20619 - csv:101203458 796.964