Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2327 | ATGGGGTGTGTGAACACAAAGCACGCGGTGTCCGTCACGCCGGCATTCGATCTCTCCGGTGTGTTTCCGGACAATGAATCGACGGCGATGGGGAACTCGGGTCTGGCGAAGACGAAGGGGTCCGGCGAGTTCGGTGAGTCGGGTCGGGCGAGTTCTAATGGCGGAGGAGGGAATGAGACTTTGAGCTTTAGATTGGGGAATTTCAATAGGTTTATGGAAGGTGAGCAAGTGGCGGCCGGGTGGCCTGCTTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTTCCGCTCCGGTCTGATGCTTATGAGAAGTTGGAAAAGATTGGACAAGGTACTTACAGCAGTGTTTTCCGAGCACGTGAGCTTGAAACGGGGAGGATTGTCGCTTTAAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTAGGTTTATGGCCAGAGAGATTATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAACTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGATCACGACATTACTGGACTCTTGTCCTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCGCGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGGCAACCTCTAACCAGTCGTGTTATCACTCTATGGTATCGTCCTCCCGAACTTCTTCTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCAGATGAATACTGGAAAAAATCTAAACTCCCTCATGCAACTCTGTTCAAGCCACAACATCCTTACAATACTTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGCATTTGTTAGAAACTCTTCTCTCCGTCGAACCATACAAGCGTGGAGTTGCCTCTTCCGCCCTCACATCTGAGTATTTCAGTACAAAGCCATATGCATGCGACCCATCAAGCATGCCAATATATCCTCCTAGCAAAGAGATCGATGCTAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGTAGCGGAAGATCCCGTGGACTAGATAGCAAGAGGTTAGCGCGAAAGCATCTAGGAATCAGTAAATTAGCGCCAGCAGAGGACCTATCAGCCTCTTCTCGACATTTGCATGAAGTTAGTACTAATGTACAGAATGTTAATGAGGAAACGGCTATCAAAGGGGGCGAGACTCAAAAGCCGTCAATTGATAGATTGGAAGAGTCTATGCATGTAAGGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTTCGAGTTTCTACATCGAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGAGGCCTCTATAAGATCACATTTAAGAACAATTTCACGAGGACACCTAATTAATGGGCTGGACCATGCTGCTATATTGCAGTCTAGAAGCAATGTGGACTCTAAGTTTCACGAAAAGGGAGACATGTCGTCCATCAGCCGTTCAAGCTCGAAGGGTCATGAATCAAATGAGAGATCCAAGGTTGTGATACGAAATCAGTGGAGCAAGTTTGCGCATACCAATTCGTTCGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCAGCACTTTACTGGCAAGATGAAATGGAAGCTAAGAGGGGTCATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCTTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGACACATCCGACAGAAAATTCGAAGATCGTGGTTCAAAAGAGGTAAAATTTGA | 2013 | 46.65 | MGCVNTKHAVSVTPAFDLSGVFPDNESTAMGNSGLAKTKGSGEFGESGRASSNGGGGNETLSFRLGNFNRFMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVITLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNTCLRQTFKDYPPTTVHLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRSRGLDSKRLARKHLGISKLAPAEDLSASSRHLHEVSTNVQNVNEETAIKGGETQKPSIDRLEESMHVRNASQGDIPFSGPLRVSTSSGFAWARRRRDEASIRSHLRTISRGHLINGLDHAAILQSRSNVDSKFHEKGDMSSISRSSSKGHESNERSKVVIRNQWSKFAHTNSFDTSDEYHSQEFAAALYWQDEMEAKRGHQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQKIRRSWFKRGKI | 670 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 17583885 | 17589567 | + | Sed0023315.1 | Sed01g2327 | 701631 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2327 | 670 | ProSiteProfiles | Protein kinase domain profile. | 104 | 388 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2327 | 670 | SMART | serkin_6 | 104 | 388 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed01g2327 | 670 | FunFam | probable serine/threonine-protein kinase At1g54610 | 91 | 186 | - | - | |
Sed01g2327 | 670 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 224 | 236 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed01g2327 | 670 | MobiDBLite | consensus disorder prediction | 553 | 581 | - | - | |
Sed01g2327 | 670 | SUPERFAMILY | Protein kinase-like (PK-like) | 98 | 394 | IPR011009 | - | |
Sed01g2327 | 670 | MobiDBLite | consensus disorder prediction | 408 | 437 | - | - | |
Sed01g2327 | 670 | PANTHER | CELL DIVISION PROTEIN KINASE | 104 | 388 | IPR050108 | GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER) | |
Sed01g2327 | 670 | MobiDBLite | consensus disorder prediction | 399 | 440 | - | - | |
Sed01g2327 | 670 | Gene3D | Phosphorylase Kinase; domain 1 | 91 | 186 | - | - | |
Sed01g2327 | 670 | Gene3D | Transferase(Phosphotransferase) domain 1 | 187 | 426 | - | - | |
Sed01g2327 | 670 | FunFam | probable serine/threonine-protein kinase At1g54610 | 187 | 427 | - | - | |
Sed01g2327 | 670 | MobiDBLite | consensus disorder prediction | 29 | 56 | - | - | |
Sed01g2327 | 670 | CDD | STKc_CDK9_like | 104 | 388 | - | - | |
Sed01g2327 | 670 | ProSitePatterns | Protein kinases ATP-binding region signature. | 110 | 133 | IPR017441 | GO:0005524(InterPro) | |
Sed01g2327 | 670 | Pfam | Protein kinase domain | 104 | 388 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2327 | Sed-Chr1:17583885 | Sed08g2091 | Sed-Chr8:35029183 | 4.50E-266 | dispersed | |
Sed01g2327 | Sed-Chr1:17583885 | Sed01g2328 | Sed-Chr1:17583885 | 2.90E-305 | tandem | |
Sed01g2327 | Sed-Chr1:17583885 | Sed11g2028 | Sed-Chr11:34366316 | 4.00E-182 | wgd | |
Sed01g2327 | Sed-Chr1:17583885 | Sed08g2090 | Sed-Chr8:35029183 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78666 | PF00069 | Pkinase | 1.90E-68 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2327 | - | - | - | 0.0 |