Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2327 ATGGGGTGTGTGAACACAAAGCACGCGGTGTCCGTCACGCCGGCATTCGATCTCTCCGGTGTGTTTCCGGACAATGAATCGACGGCGATGGGGAACTCGGGTCTGGCGAAGACGAAGGGGTCCGGCGAGTTCGGTGAGTCGGGTCGGGCGAGTTCTAATGGCGGAGGAGGGAATGAGACTTTGAGCTTTAGATTGGGGAATTTCAATAGGTTTATGGAAGGTGAGCAAGTGGCGGCCGGGTGGCCTGCTTGGCTCAGCGCCGTCGCCGGTGAAGCCATTCAGGGTTGGGTTCCGCTCCGGTCTGATGCTTATGAGAAGTTGGAAAAGATTGGACAAGGTACTTACAGCAGTGTTTTCCGAGCACGTGAGCTTGAAACGGGGAGGATTGTCGCTTTAAAGAAGGTTCGGTTCGACAATTTTGAGCCTGAAAGTGTTAGGTTTATGGCCAGAGAGATTATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAACTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGATCACGACATTACTGGACTCTTGTCCTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCGCGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGGCAACCTCTAACCAGTCGTGTTATCACTCTATGGTATCGTCCTCCCGAACTTCTTCTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCAGATGAATACTGGAAAAAATCTAAACTCCCTCATGCAACTCTGTTCAAGCCACAACATCCTTACAATACTTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGCATTTGTTAGAAACTCTTCTCTCCGTCGAACCATACAAGCGTGGAGTTGCCTCTTCCGCCCTCACATCTGAGTATTTCAGTACAAAGCCATATGCATGCGACCCATCAAGCATGCCAATATATCCTCCTAGCAAAGAGATCGATGCTAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGTAGCGGAAGATCCCGTGGACTAGATAGCAAGAGGTTAGCGCGAAAGCATCTAGGAATCAGTAAATTAGCGCCAGCAGAGGACCTATCAGCCTCTTCTCGACATTTGCATGAAGTTAGTACTAATGTACAGAATGTTAATGAGGAAACGGCTATCAAAGGGGGCGAGACTCAAAAGCCGTCAATTGATAGATTGGAAGAGTCTATGCATGTAAGGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTTCGAGTTTCTACATCGAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGAGGCCTCTATAAGATCACATTTAAGAACAATTTCACGAGGACACCTAATTAATGGGCTGGACCATGCTGCTATATTGCAGTCTAGAAGCAATGTGGACTCTAAGTTTCACGAAAAGGGAGACATGTCGTCCATCAGCCGTTCAAGCTCGAAGGGTCATGAATCAAATGAGAGATCCAAGGTTGTGATACGAAATCAGTGGAGCAAGTTTGCGCATACCAATTCGTTCGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCAGCACTTTACTGGCAAGATGAAATGGAAGCTAAGAGGGGTCATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCTTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGACACATCCGACAGAAAATTCGAAGATCGTGGTTCAAAAGAGGTAAAATTTGA 2013 46.65 MGCVNTKHAVSVTPAFDLSGVFPDNESTAMGNSGLAKTKGSGEFGESGRASSNGGGGNETLSFRLGNFNRFMEGEQVAAGWPAWLSAVAGEAIQGWVPLRSDAYEKLEKIGQGTYSSVFRARELETGRIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVITLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNTCLRQTFKDYPPTTVHLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRSRGLDSKRLARKHLGISKLAPAEDLSASSRHLHEVSTNVQNVNEETAIKGGETQKPSIDRLEESMHVRNASQGDIPFSGPLRVSTSSGFAWARRRRDEASIRSHLRTISRGHLINGLDHAAILQSRSNVDSKFHEKGDMSSISRSSSKGHESNERSKVVIRNQWSKFAHTNSFDTSDEYHSQEFAAALYWQDEMEAKRGHQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQKIRRSWFKRGKI 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17583885 17589567 + Sed0023315.1 Sed01g2327 701631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2327 670 ProSiteProfiles Protein kinase domain profile. 104 388 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2327 670 SMART serkin_6 104 388 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2327 670 FunFam probable serine/threonine-protein kinase At1g54610 91 186 - -
Sed01g2327 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2327 670 MobiDBLite consensus disorder prediction 553 581 - -
Sed01g2327 670 SUPERFAMILY Protein kinase-like (PK-like) 98 394 IPR011009 -
Sed01g2327 670 MobiDBLite consensus disorder prediction 408 437 - -
Sed01g2327 670 PANTHER CELL DIVISION PROTEIN KINASE 104 388 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed01g2327 670 MobiDBLite consensus disorder prediction 399 440 - -
Sed01g2327 670 Gene3D Phosphorylase Kinase; domain 1 91 186 - -
Sed01g2327 670 Gene3D Transferase(Phosphotransferase) domain 1 187 426 - -
Sed01g2327 670 FunFam probable serine/threonine-protein kinase At1g54610 187 427 - -
Sed01g2327 670 MobiDBLite consensus disorder prediction 29 56 - -
Sed01g2327 670 CDD STKc_CDK9_like 104 388 - -
Sed01g2327 670 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524(InterPro)
Sed01g2327 670 Pfam Protein kinase domain 104 388 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2327 Sed-Chr1:17583885 Sed08g2091 Sed-Chr8:35029183 4.50E-266 dispersed
Sed01g2327 Sed-Chr1:17583885 Sed01g2328 Sed-Chr1:17583885 2.90E-305 tandem
Sed01g2327 Sed-Chr1:17583885 Sed11g2028 Sed-Chr11:34366316 4.00E-182 wgd
Sed01g2327 Sed-Chr1:17583885 Sed08g2090 Sed-Chr8:35029183 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78666 PF00069 Pkinase 1.90E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2327 - - - 0.0