Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2328 ATGGCCAGAGAGATTATGATTCTCCGCAGGCTTGATCACCCTAACATCATCAAACTGGAGGGCTTAATTACGTCTCGTTTATCATGTAGCATTTACCTTGTGTTCGAGTACATGGATCACGACATTACTGGACTCTTGTCCTGCCCCGACATCACTTTTAGTGAATCACAGATTAAATGCTACATGAAACAATTGTTATCCGGGCTTGAGCATTGTCACTCGCGTGGCGTAATGCATCGGGATATTAAAGGATCTAATCTTCTAGTCAATAATGAAGGGGTATTGAAGGTGGCTGATTTTGGATTGGCAAACTTCTGTAATTCCGGGCACCGGCAACCTCTAACCAGTCGTGTTATCACTCTATGGTATCGTCCTCCCGAACTTCTTCTGGGTTCAACAGACTATAATGCATCTGTGGATCTTTGGAGTGTTGGCTGTGTTTTTGCAGAACTCCTTGTTGGGAAACCTATTCTTCAAGGAAGAACAGAGGTTGAACAGCTACACAAGATCTTCAAGCTTTGCGGCTCTCCTCCAGATGAATACTGGAAAAAATCTAAACTCCCTCATGCAACTCTGTTCAAGCCACAACATCCTTACAATACTTGTTTACGGCAGACCTTCAAAGATTATCCTCCGACGACTGTGCATTTGTTAGAAACTCTTCTCTCCGTCGAACCATACAAGCGTGGAGTTGCCTCTTCCGCCCTCACATCTGAGTATTTCAGTACAAAGCCATATGCATGCGACCCATCAAGCATGCCAATATATCCTCCTAGCAAAGAGATCGATGCTAAACAAAGAGAGGAGTCTAGAAGGAAAAAAGGTAGCGGAAGATCCCGTGGACTAGATAGCAAGAGGTTAGCGCGAAAGCATCTAGGAATCAGTAAATTAGCGCCAGCAGAGGACCTATCAGCCTCTTCTCGACATTTGCATGAAGTTAGTACTAATGTACAGAATGTTAATGAGGAAACGGCTATCAAAGGGGGCGAGACTCAAAAGCCGTCAATTGATAGATTGGAAGAGTCTATGCATGTAAGGAATGCATCTCAAGGAGACATTCCCTTCTCTGGCCCCCTTCGAGTTTCTACATCGAGTGGCTTTGCGTGGGCTAGACGACGAAGAGACGAGGCCTCTATAAGATCACATTTAAGAACAATTTCACGAGGACACCTAATTAATGGGCTGGACCATGCTGCTATATTGCAGTCTAGAAGCAATGTGGACTCTAAGTTTCACGAAAAGGGAGACATGTCGTCCATCAGCCGTTCAAGCTCGAAGGGTCATGAATCAAATGAGAGATCCAAGGTTGTGATACGAAATCAGTGGAGCAAGTTTGCGCATACCAATTCGTTCGATACTTCGGATGAGTACCACTCACAGGAATTTGCAGCAGCACTTTACTGGCAAGATGAAATGGAAGCTAAGAGGGGTCATCAGGACCAAGTGGACAAAGTTGAATATTCTGGGCCTTTGTTATCTCAATCTAGCAGAGTGGATGAACTGCTAGACAGACACGAGAGACACATCCGACAGAAAATTCGAAGATCGTGGTTCAAAAGAGGTAAAATTTGA 1572 44.47 MAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMDHDITGLLSCPDITFSESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGVLKVADFGLANFCNSGHRQPLTSRVITLWYRPPELLLGSTDYNASVDLWSVGCVFAELLVGKPILQGRTEVEQLHKIFKLCGSPPDEYWKKSKLPHATLFKPQHPYNTCLRQTFKDYPPTTVHLLETLLSVEPYKRGVASSALTSEYFSTKPYACDPSSMPIYPPSKEIDAKQREESRRKKGSGRSRGLDSKRLARKHLGISKLAPAEDLSASSRHLHEVSTNVQNVNEETAIKGGETQKPSIDRLEESMHVRNASQGDIPFSGPLRVSTSSGFAWARRRRDEASIRSHLRTISRGHLINGLDHAAILQSRSNVDSKFHEKGDMSSISRSSSKGHESNERSKVVIRNQWSKFAHTNSFDTSDEYHSQEFAAALYWQDEMEAKRGHQDQVDKVEYSGPLLSQSSRVDELLDRHERHIRQKIRRSWFKRGKI 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17583885 17589567 + Sed0023315.2 Sed01g2328 701632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2328 523 Pfam Protein kinase domain 2 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2328 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2328 523 Gene3D Phosphorylase Kinase; domain 1 1 39 - -
Sed01g2328 523 FunFam probable serine/threonine-protein kinase At1g54610 40 280 - -
Sed01g2328 523 PANTHER CELL DIVISION PROTEIN KINASE 1 241 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Sed01g2328 523 SMART serkin_6 1 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2328 523 FunFam Putative serine threonine-protein kinase 1 44 - -
Sed01g2328 523 MobiDBLite consensus disorder prediction 406 434 - -
Sed01g2328 523 SUPERFAMILY Protein kinase-like (PK-like) 2 247 IPR011009 -
Sed01g2328 523 MobiDBLite consensus disorder prediction 261 290 - -
Sed01g2328 523 MobiDBLite consensus disorder prediction 252 293 - -
Sed01g2328 523 Gene3D Transferase(Phosphotransferase) domain 1 40 279 - -
Sed01g2328 523 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2328 Sed-Chr1:17583885 Sed08g2090 Sed-Chr8:35029183 6.00E-266 dispersed
Sed01g2327 Sed-Chr1:17583885 Sed01g2328 Sed-Chr1:17583885 2.90E-305 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78667 PF00069 Pkinase 6.20E-56 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2328 - - - 0.0