Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2329 ATGGCGCTGTTTAGAAAATTGTTCTACCGGAAGCCTCCCGATCGCCTTCTCGAGATCGCTGAGAGAGTTTACGTGTTTGATTGTTGCTTCTCTACCGATGTCTTGGAAGAGGATGAGTACAAAGTGTACTTGGCTAGCATTATACCAAAGCTGCAAGACCACTTTCCTGATGCTTCTTTCATGGTGTTTAACTTTAGTGAACGAAAGAGGACGACGAAGACTTCCGACATAATGTCTCATTATGGTATGACAGTTATGGAATATCCTCTGCAATATGAAGGGTGTCCACTACTGCCATTGGAGATGATCCACCACTTCATTCGATCGAGTGAAAGCTGGTTGTCGTTGGAGAGACAGAAAAATGTTATGTTGATGAACTGCGAACGAGGGGGATGGCCAATCCTTGCTTTCATGCTTTCAAGTCTCTTACTGCACCGTAAACACTATGAGGGGGAGCTTAAGACCCTTGAAATGGTCTACAGGCAAGCTCCTACAGAGCTTTTCCATGTTCTTTCTCCTGTTAACTCACAGCCTTCACAAATGAGATACCTTCAGTATATTTCTAGGAAAAAATTAGTTTCTGATTGGCCTCCACCTGATACACCTCTATGTATCGACTGCTTGATACTTCGAGACCTTCCTATTTTTGATGGAGGTGAAGGGTGCAGGCCTATCATACGCATTTACGGTCAGGACCCATCAACACCGCGGAATAGAAGTCCAAAACTTGTTTTTTCTAGTGCAAAGATGAAAAAACATGGTTTGCAGGGAGCAAGCGGTCTGGTAAAAATGGACATCCATTGTCATGTTCAAGGGGATGTTGTGCTTGAGTGCATTCATTTAAATGGAGATCTAATACACGACGAAGTTATATTTAGAGTTATGTTTCACACGGCGTTTGTGCATTCGAACAGTTTGAAGTTCAATCGTGATGAGGTTGATATTATATGGGATGCCAAAGAGCAGTTTTCTAAAGATTTTAGAGCAGAGGTACTTTTCCTGGATGCTGATGATGTTGTGCCAAACCTCTCTACAGCGACTAAAAGTGATGACAAAATAGAAATTGAAAGCAATTCAACCGAGGAGTTTTTTGAAGTGGAAGAAATATTTAGCAATATTGTGGACGTGCAAGAAGTTAAGAGGGACTACGATGTTCAAATGGTACATGCTAATGAAACAGATGGTATTGACCATCAAGCAGTTTGGAAGGAGGATGCAGATCCTCCTACATTCCAACGCTGTAAATCTTTTGTTGGGAGTCAAATCACGGACAAGAAAATGGATTGTAACGTTGAAGCAGTGAAGGACATAACTGTTGATGACGTGACTTTCAAGACAGATGAAAAAGTGGACTCTGGTCTTCATGCTGTGAAGGATATTGTTGTGGATCATGGAGATAAAAAGTCAAATCCTCTGCTGTTTTCTGTTAATGTACTCAGACGTATGGGAATTAAGGAACTGATAGACCGAGTGGAGCACAAAGGGTGCGGAGAAGATGCTGCTATTTCGGACTTTGAATCAAAGGTTCCTGAGAAAAAGTTTGATTCTGATGCGTGGAGGGTTAAATATGAGAAGTTGCAGTCAATAGCATCTAGAAAGCAGCCTTCATCAACAGTTAAGGTGATAAATCAAACTTCTGTCGCTAAACAAAAGATTAAACAGCAAGAAGATCAGGACTTTCTCATAAAACAGGCAAAACCAAATACTCTTTCTAGATGGACTACACATGACAAAGAATCTTACATAAACTCCATGCATGTGTTATATTCACCACCAAGGCATACTGGTGCCTTAGCAGCGTCTATCAGTTCTCCTACCAGAGATTCTTATCCATATTCAACTTCAAAACCTGCTTCTGCTACTTTAGGACTGCTGCTGTCAACTGATACAGGTGATGAACAAAAAAGTAACAAGGTGAGTCCTAAAAATCCTTTATGCTCCACAGCAGAGATTCTTGCGAGTAAACCACGATCACCTCTTGGCTCCCCAAGACTATTATCAAATGTTGTTATGCATCAAGATCCTAATCTTTATCTATCTCCAACTACACTTCTGCAGCCACCAGCTCCTCATGCTAACACATCTTTCTTGCATGCATCATCCCCTAAACCTTCTTTGTCACCCTCTTCATATTTTCACATAAATGCAAGATCTTCTCCTCCATGTCCACCTCCACCTCCACCTCCACCACCTCCTCCTCCACCTTCCAATCACGTGGCTCCTAAAAGTTCAGCATTGATGTCTGGAAATGCGCCTAAGCATAGTGCTCCACCGGCACCACCTCCACCTCCTGTACGTAGAGCTCAACCACAATCACCTCCTTCGCAGCTACCCCCTTCACATGGAGCTCTGCTTTCTTCACGGCTATCGAATGCTGGAGTCTTGCCACCACCACCTCCCCCACCTCCTCCAATTCAGAGGACAGCTCCTCCACATTTAACCCAGGGGCGACAGGCTTTAACATCTCCAGTAGTCTCATCAACCCTGCCATCTCCAATTGGTGATGCACCATCACCTCCTCAACCTATGACTGGTCCCCTTCCACTGGTTTCTTCTCCTTCCAGACATTTTGGAGGTATTATGTCCTCACACCCAGGAGCAGGTGCTAAAGGAGTAAATTCTTCAACTAATGTGAAAACATCATCTATAGTGAGGGGACGTGGGTTCTCGCGCTCAATAGGCACGGGGGTGGCTTCTACAGTGCCTCGATCATCATTAAAACCTCTGCATTGGAGCAAGGTGACTCGTGTACTACAAGGAAGCTTATGGGAAGAATTACAAAGATCTGGAAACCCTGAAAGTGCACCAGAATTTGATGTATCTGAGCTGGAGACTCTTTTCTCTGTGGTTGTTCCTAAACCTAGTGTTGACTCAGTAGTTAAATCCGGAGGACGGAGGAAGTCAGTTGGATCAAAATTGGACAAAGTTCACTTGATTGATCTTAGGAGGGCAAATAACACTGAAATTATGCTAACAAAAGTTAGGATGCCACTATCTGACATGATGGCAGCAGTACTCTCCATGGATGAGTCTGTATTAGATGCAGATCAAGTGGAAAATCTTATCAAATTTTGCCCCACGAAAGAGGAGATGGAGCTTCTCAAGGGATACTGTGGCGACAAGGATAAACTTGGAAAGTGCGAACAGTACTTTTTGGAGATGATGCAAGTTCCTCGTGTGGAGTCAAAGTTAAGAGTTTTCTCTTTCAAGATTCACTTCAGCTCACAGATGGTAGAGTTCAAGAAAAGCCTAAACACTGTAAACTCTGTCTGTCAAGAGGTGAAGAATTCTAGTAAGTTGAAGGAGATATTGAAGAGAATTCTTTGCCTGGGAAATATGCTGAACCAAGGAACTGCAAGGGGTTCGGCAATTGGATTCAGGTTGGATAGTCTTTCAAAACTCACTGATACTCGAGCATCTAACAATAAGATGACTCTCATGCATTATCTCTGTAAGGTCCTTGCTTGTAAGTCACCATCACTTGTTGATTTTCATCTTGACCTTGGTAGCTTGGAAGCTGCGTCTAAGATCCAATTGAAATCTTTGGCAGAAGAAATGCAAGCAATCACAAAAGGATTGGAAAAGGTGAAGCAGGAACTAGTTGCATCTGAAAGCGATGGCCCTATCTCTGAAACTTTTCGTAAGACATTGAAAGGATTTGTTACTCTTGCTGAGACGGAGGTGGAATCTGTGACAGTTCTTTACTCGTTGGCGGGTAGAAATGCTGATGCACTTGCACTATATTTTGGCGAGGATCCGGCTCGTTGTCCATTTGAACAAGTTACAGGAACTCTCTTCCATTTTACAAGGTCCTTTCTGAAAGCACATGAAGAGAATTGTAAGCAGTTAGAAATAGAGATGAGAAGGCTGAGAAAATAG 3879 42.9 MALFRKLFYRKPPDRLLEIAERVYVFDCCFSTDVLEEDEYKVYLASIIPKLQDHFPDASFMVFNFSERKRTTKTSDIMSHYGMTVMEYPLQYEGCPLLPLEMIHHFIRSSESWLSLERQKNVMLMNCERGGWPILAFMLSSLLLHRKHYEGELKTLEMVYRQAPTELFHVLSPVNSQPSQMRYLQYISRKKLVSDWPPPDTPLCIDCLILRDLPIFDGGEGCRPIIRIYGQDPSTPRNRSPKLVFSSAKMKKHGLQGASGLVKMDIHCHVQGDVVLECIHLNGDLIHDEVIFRVMFHTAFVHSNSLKFNRDEVDIIWDAKEQFSKDFRAEVLFLDADDVVPNLSTATKSDDKIEIESNSTEEFFEVEEIFSNIVDVQEVKRDYDVQMVHANETDGIDHQAVWKEDADPPTFQRCKSFVGSQITDKKMDCNVEAVKDITVDDVTFKTDEKVDSGLHAVKDIVVDHGDKKSNPLLFSVNVLRRMGIKELIDRVEHKGCGEDAAISDFESKVPEKKFDSDAWRVKYEKLQSIASRKQPSSTVKVINQTSVAKQKIKQQEDQDFLIKQAKPNTLSRWTTHDKESYINSMHVLYSPPRHTGALAASISSPTRDSYPYSTSKPASATLGLLLSTDTGDEQKSNKVSPKNPLCSTAEILASKPRSPLGSPRLLSNVVMHQDPNLYLSPTTLLQPPAPHANTSFLHASSPKPSLSPSSYFHINARSSPPCPPPPPPPPPPPPPSNHVAPKSSALMSGNAPKHSAPPAPPPPPVRRAQPQSPPSQLPPSHGALLSSRLSNAGVLPPPPPPPPPIQRTAPPHLTQGRQALTSPVVSSTLPSPIGDAPSPPQPMTGPLPLVSSPSRHFGGIMSSHPGAGAKGVNSSTNVKTSSIVRGRGFSRSIGTGVASTVPRSSLKPLHWSKVTRVLQGSLWEELQRSGNPESAPEFDVSELETLFSVVVPKPSVDSVVKSGGRRKSVGSKLDKVHLIDLRRANNTEIMLTKVRMPLSDMMAAVLSMDESVLDADQVENLIKFCPTKEEMELLKGYCGDKDKLGKCEQYFLEMMQVPRVESKLRVFSFKIHFSSQMVEFKKSLNTVNSVCQEVKNSSKLKEILKRILCLGNMLNQGTARGSAIGFRLDSLSKLTDTRASNNKMTLMHYLCKVLACKSPSLVDFHLDLGSLEAASKIQLKSLAEEMQAITKGLEKVKQELVASESDGPISETFRKTLKGFVTLAETEVESVTVLYSLAGRNADALALYFGEDPARCPFEQVTGTLFHFTRSFLKAHEENCKQLEIEMRRLRK 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17594475 17606393 + Sed0024447.1 Sed01g2329 701633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2329 1292 MobiDBLite consensus disorder prediction 811 832 - -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 754 777 - -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 681 716 - -
Sed01g2329 1292 Gene3D Formin, FH2 domain 897 1283 IPR042201 -
Sed01g2329 1292 SUPERFAMILY Formin homology 2 domain (FH2 domain) 796 1291 - -
Sed01g2329 1292 PANTHER FORMIN-J 1 1288 IPR051144 -
Sed01g2329 1292 Pfam C2 domain of PTEN tumour-suppressor protein 198 333 IPR014020 -
Sed01g2329 1292 SMART it6_source 896 1292 IPR015425 -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 718 739 - -
Sed01g2329 1292 Gene3D - 203 333 - -
Sed01g2329 1292 Pfam Formin Homology 2 Domain 902 1272 IPR015425 -
Sed01g2329 1292 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 333 IPR035892 -
Sed01g2329 1292 ProSiteProfiles C2 tensin-type domain profile. 200 336 IPR014020 -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 793 809 - -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 681 850 - -
Sed01g2329 1292 SMART PTEN_C2_2 198 335 IPR014020 -
Sed01g2329 1292 MobiDBLite consensus disorder prediction 833 847 - -
Sed01g2329 1292 Gene3D Protein tyrosine phosphatase superfamily 14 197 IPR029021 -
Sed01g2329 1292 Coils Coil 1179 1199 - -
Sed01g2329 1292 ProSiteProfiles Formin homology-2 (FH2) domain profile. 896 1292 IPR015425 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2329 Sed-Chr1:17594475 Sed12g1975 Sed-Chr12:30723772 6.80E-287 dispersed
Sed05g0223 Sed-Chr5:1370090 Sed01g2329 Sed-Chr1:17594475 1.10E-206 transposed
Sed12g2294 Sed-Chr12:33108590 Sed01g2329 Sed-Chr1:17594475 2.20E-244 transposed
Sed01g2329 Sed-Chr1:17594475 Sed12g1974 Sed-Chr12:30723772 6.80E-287 wgd
Sed01g2329 Sed-Chr1:17594475 Sed08g0241 Sed-Chr8:1371158 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2329 K28090 - csv:101221127 2004.18