Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2384 ATGGGCAATGGGAGAAGATGGAGTTGGTGGCGGCTGTTCATTGCGACGGCAGTGGTTCTGTTCCGTAGCGGCAGTGGTTCACAAGTAGTATCGAGGATTGCGTTTGGATCATGCGCCAACCAGGATGCTCCTCAGCCAATCTGGAACTCCGTCCTCAACTTCGATCCGCAAGTTTTCATTTGGCTCGGTGATAACATCTATGGAGATATTAGGCGTCCTTTCAAATTTCTCGGCCCACAAAGGACGGTGGGACCGTGGAAAAATGCTCCACGTTTCGTTCCTTCGTCCAAGCAGGAAATGATCCTCAAATACAACAAGGGCAACGCAATTCCAGGGTATAATCGCCTTAAACAGAGAACCAAGGTAATCGGTGTCTGGGATGATCATGATTATGGATTAAATGATGCTGGAAAGGAATTTACTGAGAAAGTCACCAATCAAAAGCTTCTTCTTGATTTTTTAGATGAACCCCTTGATAGTCCAAGGCGCAAGCAGCATGGTGTGTATGCATCATATATGTTTGGCCCTATAGGTAAACAAATTAAGGTTATTTTATTAGATACTAGATATCACCGTGATGGGTTGTTTAGTGATGGAACTATTTTGGGTACCGAACAATGGACATGGCTGGAGAAAGAGCTTAAGGGTCCGGAGTCGGAAGTTACAATAATTGGGTCATCCATTCAGGTTATATCAAATCTTTCAGCAACCACCGGGCCGTTATTCTATTTGGAATCTTGGGGACGTTTTCCGAAGGAGAGAGATCTCCTTTTCAAGTTGGTTGCTGATAGCAAGAGAAAAGGAGTTTTCTTTATAAGCGGAGATGTTCATTTTGGAGAAATTTCACGCTATGATTGTGCTGTTGAATATCCGCTATATGACATAACCTCAAGTGGTCTTACCCAAGCAGTTGAAAAGGTACTTCCGCAACCATTACGATTTGTAGTGAGGTTTCTTGCGTGGTTGACGCCATCTACTATGAGAGTTATCAAAAGCAATTGCAGATACAAGTCATGCACATTTGGGCAACCAAATTTTGGAGTGATTGAAATTGATTGGGGTGCAAGTCCAGTAAGAATTAAAATGGAAGTGCGGGATACAAATGGAGTTGGTGTGGTAGGTGTAAACATCTCTTTGAGTTCATTGCGTCCAGGAAACAGTAGTAGTAATACGGGAGAATATCAGAGGCATTGTCTGTTGGAAGTTAATTTGGGATGGATAGTCCGATATCGCCTCGCAATTTTGTTTTATAGTACCTTGACATGTAAGTTACGAAAATTTGGCAATTCTGATTTGAAATTTTGCAAATAA 1311 42.33 MGNGRRWSWWRLFIATAVVLFRSGSGSQVVSRIAFGSCANQDAPQPIWNSVLNFDPQVFIWLGDNIYGDIRRPFKFLGPQRTVGPWKNAPRFVPSSKQEMILKYNKGNAIPGYNRLKQRTKVIGVWDDHDYGLNDAGKEFTEKVTNQKLLLDFLDEPLDSPRRKQHGVYASYMFGPIGKQIKVILLDTRYHRDGLFSDGTILGTEQWTWLEKELKGPESEVTIIGSSIQVISNLSATTGPLFYLESWGRFPKERDLLFKLVADSKRKGVFFISGDVHFGEISRYDCAVEYPLYDITSSGLTQAVEKVLPQPLRFVVRFLAWLTPSTMRVIKSNCRYKSCTFGQPNFGVIEIDWGASPVRIKMEVRDTNGVGVVGVNISLSSLRPGNSSSNTGEYQRHCLLEVNLGWIVRYRLAILFYSTLTCKLRKFGNSDLKFCK 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17908942 17914268 + Sed0015844.2 Sed01g2384 701688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2384 436 PANTHER CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN 25 420 - -
Sed01g2384 436 Pfam PhoD-like phosphatase 34 286 IPR018946 -
Sed01g2384 436 CDD MPP_PhoD 32 302 IPR018946 -
Sed01g2384 436 SUPERFAMILY Metallo-dependent phosphatases 32 372 IPR029052 -
Sed01g2384 436 Gene3D - 30 368 IPR038607 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2384 K01113 - - csv:101210375 757.288
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2383 Sed-Chr1:17908942 Sed01g2384 Sed-Chr1:17908942 5.00E-253 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g15 Blo01g01662 . . . Bpe02g00280 . . Bma01g02433 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2384 . . . . . . . . Bhi09g02779 Tan01g5191 Cmetu07g1787 . Hepe01g2386 Mch11g0009 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010282 1 1 1 1 1 0 2 0 0 1 1 1 1 0 1 2 0 0 0 0 1 1 1 1 2 0 1 2 1 1 25