Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2387 ATGGCGACCTTTCAGTTTGAGCCACAAGCTTCTCCATCTTCCTCATTCCTCGGGAGCTCTCTTCTTCCACAGCTTCGTAGTCCGACCCCCACAACCCTTCATCTTCGGAACACCCACTCCATCCCTCGTCGTCCGATCTGCACAGCTTCTTGGCAGGAGCTTGCCGGGGTTCTCGTTTTCTCCGCAATTCCCTTCACCGCTGTCAAAGCCGTCGCCAACAGCCCACTCGGGGCGTCGCTCCAGAGGCAATTGCAGAAGAAAAAAAACGCTGCCATCGCCAATTCTTCCACCTTCAACGCTCTTGCCGCCCAGGCTAGAAAACGCAGCTCATGGTATGGAGAAGAGCGTCCTCGCTGGCTTGGTCCAATACCGTATGATTATCCAAAATATCTGATAGGTGAACTGCCAGGTGATTACGGATTTGATATTGCAGGTCTGAGTGAAGATCCTGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGTGCTTTAATTCCAGAGATCTTAGATATTTTTGGAGCGTTTCATTTCATTGAACCCATCTGGTGGCGAGTTGGCTATTCAAAACTTAAGGGAGATACACTCGATTATCTTGGAATACCAGGGCTTCATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTAATGGTTGGACCCGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATTTGCCGGGGGATATAAATTATCCAGGTGGTGTATTGTTTGATCCCTTGAACCTGTCCAAGGATGCTGCAGCGTTTGAGGAACTTAAGGTAAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCATGGCTAGGATTTTACAGTCAAGCAGCATTGACCGGTAAGGGACCGGTCCAAAACCTTGTCGACCACATTTCAGACCCTTTCCACAATAACTTCCTTTCCCTGCTCAACTGA 996 47.99 MATFQFEPQASPSSSFLGSSLLPQLRSPTPTTLHLRNTHSIPRRPICTASWQELAGVLVFSAIPFTAVKAVANSPLGASLQRQLQKKKNAAIANSSTFNALAAQARKRSSWYGEERPRWLGPIPYDYPKYLIGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALIPEILDIFGAFHFIEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLVDHISDPFHNNFLSLLN 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17929741 17937590 - Sed0015290.1 Sed01g2387 701691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2387 331 SUPERFAMILY Chlorophyll a-b binding protein 110 329 - -
Sed01g2387 331 MobiDBLite consensus disorder prediction 1 22 - -
Sed01g2387 331 Gene3D Chlorophyll a/b binding protein domain 118 330 - -
Sed01g2387 331 FunFam Chlorophyll a-b binding protein, chloroplastic 118 330 - -
Sed01g2387 331 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 70 328 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Sed01g2387 331 Pfam Chlorophyll A-B binding protein 128 303 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2387 Sed-Chr1:17929741 Sed14g1562 Sed-Chr14:23798355 5.10E-53 dispersed
Sed01g2387 Sed-Chr1:17929741 Sed08g2078 Sed-Chr8:34963279 3.20E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2387 K14172 - csv:101209460 575.859