Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2393 ATGGCGGCTGCTAATTCACCGGTCCAAGATCCTTCCACGGATCCTTCCGCTAAACAACCTGCGCCTGAGTCTGAGCCCGAGCCGATTAAAATCGAGACTCCTCGCCCGGAGGACCCGCCGCCCGATCCGATTCATCTTCCCAGCTACTCCAGATGGTTCTCCTGGACCGACATTCACGACTGCGAGGTTCGGTTCCTTCCGGAGTTCTTCGATTCCCGCTCCCCCTCCAAGAACCCTAGGGTTTACAAGTACCTTCGAAATTCTATTCTCAGATCTTTCAGACGCCGCCCTTCCAACAAGATCACCTTTACCGATGTTCGAAAGACGCTGGTTGCCGACGTTGGATCCGTTCGTCGGGTTTTCGATTTCCTCGAGGCTTGGGGTCTCATCAATTACTCCCCATCTCTCCTCAACAAACCGCTCAAGTGGGACGACAGGGACCCCATCAAAACCAACAATGCCTCCTCTGCTGAACCTGGAGCACCTGCTTCCGCAGATTCCTCCGCTCCCAAACACGCTTCTAACAGACTCTGCAGTGGCTGCAAGTCTATTTGCACCATTGCTTGCTTTGCTTGCGACAAGTTTGATTTGACGCTCTGTGCAAGGTGCTATGTTCGTGGAAACCATCGAGTTGGTGTTAATTCTTCAGATTTTCGACGTGTTGAGATCAATGAAGATACACGAACAGATTGGACTGATAAGGAGACTTTGCATCTTCTTGAAGCTTTGACGCATTATGGGGATGATTGGAAAAAAGTTGCACAACATGTTGGTGGCAGAACTGAAAGGGAATGTGTTGCCCATTTTGTGAAGCTTCCTTTGGGAGAGCAGTTTCATGGCTTTTCAGATTCTGGAAATATTGATAGCAAGTACACTGTGGTGAAGGATCATATCAGTGACGATCTTATACTGGAAAGTACTGAGACATCTCTTCCTAGTAAAAGAATCCGTCTCTCACCTCTTGCTGATGCAAGTAATCCCATAATGGCTCAGGCTGCCTTTTTGTCGTCTTTGGTGGGTGTTGACGTTGCAGAAGCAGCTGCCCAGGCAGCTGTGACTAAACTTTCTGAGATGGGCTTTGTAGGAGATAGGGAAGTTGCCACATCTGTTGCTAGGAATATATGTGAGCAAGGAAACGATGTTGCATTTAGAGAATCAGAGATTGAGAAGGAAGAGAGAGCAATATCTCATACACTAGACGTTCAGATGAAAGAGGTTGTAGATAAGCTTGTTCGTTTTGAGGAGCTAGACTTGCAGATGGAGAAGAAATTTAAGCAGTTGGACCAGATGAAAAGCATGCTATTTGTTGATCAACTAAATCTCTTATTCCATAAACGTGGTATCCCTACTGTTGAAGACGACAAGAACACTAACAATGTAAGAACCTGTTGA 1392 46.98 MAAANSPVQDPSTDPSAKQPAPESEPEPIKIETPRPEDPPPDPIHLPSYSRWFSWTDIHDCEVRFLPEFFDSRSPSKNPRVYKYLRNSILRSFRRRPSNKITFTDVRKTLVADVGSVRRVFDFLEAWGLINYSPSLLNKPLKWDDRDPIKTNNASSAEPGAPASADSSAPKHASNRLCSGCKSICTIACFACDKFDLTLCARCYVRGNHRVGVNSSDFRRVEINEDTRTDWTDKETLHLLEALTHYGDDWKKVAQHVGGRTERECVAHFVKLPLGEQFHGFSDSGNIDSKYTVVKDHISDDLILESTETSLPSKRIRLSPLADASNPIMAQAAFLSSLVGVDVAEAAAQAAVTKLSEMGFVGDREVATSVARNICEQGNDVAFRESEIEKEERAISHTLDVQMKEVVDKLVRFEELDLQMEKKFKQLDQMKSMLFVDQLNLLFHKRGIPTVEDDKNTNNVRTC 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17956710 17974519 - Sed0018640.3 Sed01g2393 701697

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2393 463 MobiDBLite consensus disorder prediction 148 169 - -
Sed01g2393 463 Gene3D - 227 276 - -
Sed01g2393 463 MobiDBLite consensus disorder prediction 1 43 - -
Sed01g2393 463 SUPERFAMILY Homeodomain-like 42 144 IPR009057 -
Sed01g2393 463 ProSiteProfiles SWIRM domain profile. 44 141 IPR007526 GO:0005515(InterPro)
Sed01g2393 463 SUPERFAMILY Homeodomain-like 228 279 IPR009057 -
Sed01g2393 463 MobiDBLite consensus disorder prediction 1 19 - -
Sed01g2393 463 PANTHER SWI/SNF COMPLEX-RELATED 64 445 - -
Sed01g2393 463 SMART sant 227 275 IPR001005 -
Sed01g2393 463 FunFam SWI/SNF complex subunit SMARCC2 isoform C 226 277 - -
Sed01g2393 463 Pfam Myb-like DNA-binding domain 228 272 IPR001005 -
Sed01g2393 463 ProSiteProfiles Myb-like domain profile. 228 273 IPR001005 -
Sed01g2393 463 Gene3D - 50 135 IPR036388 -
Sed01g2393 463 ProSiteProfiles SANT domain profile. 226 277 IPR017884 -
Sed01g2393 463 MobiDBLite consensus disorder prediction 152 169 - -
Sed01g2393 463 CDD SANT 231 272 IPR001005 -
Sed01g2393 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 228 265 IPR017930 -
Sed01g2393 463 Pfam SWIRM domain 54 132 IPR007526 GO:0005515(InterPro)
Sed01g2393 463 FunFam SWI/SNF complex subunit SMARCC2 isoform c 50 136 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2393 K11649 - - csv:101219016 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2391 Sed-Chr1:17956710 Sed01g2393 Sed-Chr1:17956710 2.40E-266 dispersed
Sed01g2393 Sed-Chr1:17956710 Sed12g2524 Sed-Chr12:34635341 4.30E-34 dispersed
Sed01g2392 Sed-Chr1:17956710 Sed01g2393 Sed-Chr1:17956710 1.40E-263 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g72 . . . Bda15g00681 Bpe12g00472 . . . . . Cma10g00047 . Car10g00036 . Sed01g2393 . . Bhi02g00661 Tan09g2396 Cmetu07g1239 . . . . Cla06g01758 Cam06g1950 Cec06g1999 Cco06g2005 Clacu06g1907 Cmu06g1847 Cre06g2661 . . . Cone19ag0221 . . . . . . . . . . . Bma08g00266 . Cmo10g00042 . . . . . . Cpe18g00918 . . . . . . . . . . . . . . Lsi06g01656 Csa01g00039 Chy02g02680 Cme02g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009874 1 1 1 1 1 0 1 0 0 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 3 2 1 28