Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2395 ATGGGCGGCTACAGCGAAGAAGGATCACGCTATGTTCATCACCATCAATTTCTTAATCCTCAATTTCATCACCATCCATTCAATCATTCTACGATTAACCCTAATTCCGATGATGATCAAGATCATCATACCAATAATCAAAACAACAACCCAGACGCCTCCTCCAATTCCCTGCGCCGCCCTCGCGGCCGTCCCCCCGGTTCCAAGAACAAGCCGAAGCCTCCGATTATCGTCACTCGCGACAGCCCCAACGTCCTTGGATCCCATGTCCTTGAGGTCTCCGCCTCCGCCGATATCCTCGACAGCCTCTCCAACTACGCCCGCCGTAGGGGCAGAGGCCTGACCATCCTCTCCGGCACTGGCACCGTCGCCAATGTCACTCTCCGCCAGCCTGCCTCTCCCATTACTCTCCATGGCAGGTTCGACATCCTATCCCTCACCGGAACCGTGCTTCCCCCTCCCGCCCCGCCCCAGGCCGGGGGGCTTTCCATATTCCTTGCGGGAGCACAGGGCCAGGTGGTGGGAGGCACGGTCGTGGGGCCCTTGGTGGCTTCCGGCCCCGTGATCTTGATGGCAGCGTCGTTTTCAAATGCGGTGTTTGAGCGGTTGCCTTTGGAGGAAGAGGAGGATCAGGAAGGTGGGGTGCAAGTGCAGCCCACGGCCTCGCAGTCCTCCGGGGTCACCGGAGGAGGAGGCGGACCGATGGGGGAGGGGAGTGGGAATCCAAATGAAGGAGTTCCCGTGTTAGGTATGGGAGGGTATCCATTTGGAGGGGATCTGTTTGGTTGGGGAAGTGGAGGTGCAAATGCAGCAAAGCCTCGTCAATTCTAG 831 58.36 MGGYSEEGSRYVHHHQFLNPQFHHHPFNHSTINPNSDDDQDHHTNNQNNNPDASSNSLRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVSASADILDSLSNYARRRGRGLTILSGTGTVANVTLRQPASPITLHGRFDILSLTGTVLPPPAPPQAGGLSIFLAGAQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPLEEEEDQEGGVQVQPTASQSSGVTGGGGGPMGEGSGNPNEGVPVLGMGGYPFGGDLFGWGSGGANAAKPRQF 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 17997694 17999236 + Sed0000098.1 Sed01g2395 701699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2395 276 CDD DUF296 89 169 IPR005175 -
Sed01g2395 276 SUPERFAMILY AF0104/ALDC/Ptd012-like 85 209 - -
Sed01g2395 276 Gene3D - 88 216 - -
Sed01g2395 276 PIRSF ESCAROLA 4 275 IPR014476 GO:0003680(InterPro)
Sed01g2395 276 ProSiteProfiles PPC domain profile profile. 83 218 IPR005175 -
Sed01g2395 276 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 236 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Sed01g2395 276 MobiDBLite consensus disorder prediction 215 229 - -
Sed01g2395 276 MobiDBLite consensus disorder prediction 21 81 - -
Sed01g2395 276 MobiDBLite consensus disorder prediction 206 250 - -
Sed01g2395 276 FunFam AT-hook motif nuclear-localized protein 86 211 - -
Sed01g2395 276 Pfam Plants and Prokaryotes Conserved (PCC) domain 88 196 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2395 Sed-Chr1:17997694 Sed08g1584 Sed-Chr8:30942651 2.70E-60 dispersed
Sed01g2395 Sed-Chr1:17997694 Sed01g2400 Sed-Chr1:18014971 4.70E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2395 - - - 0.0