Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2398 ATGGAGAAGGGAGCGACCACTGTTTCCGCCATGGACGCATTCGAGAAGCTCGAGAAGGTCGGTGAAGGAACCTATGGCAAAGTTTACAGGGCTAGGGAGAAGGCCACTGGCAAGATTGTAGCGCTCAAGAAAACCCGCCTTCACGAGGACGAGGAGGGCGTTCCTCCCACCACTCTCAGAGAAGTCTCCATTCTCAGAATGCTTTCTCGTGATCCTCATATTGTAAGGTTGATGGACGTCAAACAAGGGCAGAACAAGGAAGGGAAAACGGTTCTTTACTTGGTGTTTGAGTACATGGATACTGATCTCAAGAAATACATCAAGAGTTTCCGTCATACGGGCGAAAGCGTTCCCGTCGACACTGTCAAGAGTCTTATGTACCAACTCTGCAAGGGCGTTGCCTTCTGTCATGGCCATGGAATCTTGCACAGGGACCTGAAACCACACAATCTGTTGATGGACCGTAAGACTATGATGCTTAAAATTGCAGACCTTGGGCTCGCTCGAGCATTTACCGTGCCAATTAAGAAGTATACTCACGAGATACTGACTCTCTGGTATAGAGCTCCTGAAGTTCTGTTGGGTGCCACACATTACTCCACAGCTGTAGATATGTGGTCTGTTGGGTGCATATTCGCTGAACTTGCTACCAAGCAGCCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAGGTATGGCCAGGTGTGAGCAAGCTAATGAACTGGCATGAGTATCCCCAGTGGAGCCCCCGAAGCCTTTCAACAGCCGTCCCGAATTTGGATGATAAGGGGCTTGATCTGCTTGCACAAATGTTGAAGTATGAACCTGCAATGCGTATTTCGGCGAAGAAAGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGCATATCTCTGA 939 48.24 MEKGATTVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGESVPVDTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQPLFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWSPRSLSTAVPNLDDKGLDLLAQMLKYEPAMRISAKKAMEHPYFDDLNKAYL 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18009800 18011656 - Sed0009546.1 Sed01g2398 701702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2398 312 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Sed01g2398 312 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Sed01g2398 312 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Sed01g2398 312 Pfam Protein kinase domain 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2398 312 Gene3D Transferase(Phosphotransferase) domain 1 101 311 - -
Sed01g2398 312 SMART serkin_6 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2398 312 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Sed01g2398 312 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2398 312 ProSiteProfiles Protein kinase domain profile. 14 304 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2398 312 FunFam Cyclin-dependent kinase 2 102 311 - -
Sed01g2398 312 PANTHER CELL DIVISION PROTEIN KINASE 14 304 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2398 Sed-Chr1:18009800 Sed14g0538 Sed-Chr14:5418258 4.10E-121 dispersed
Sed14g0902 Sed-Chr14:17889189 Sed01g2398 Sed-Chr1:18009800 2.20E-36 dispersed
Sed14g0908 Sed-Chr14:18075833 Sed01g2398 Sed-Chr1:18009800 1.90E-33 dispersed
Sed01g2398 Sed-Chr1:18009800 Sed01g2399 Sed-Chr1:18009800 1.60E-165 tandem
Sed01g2398 Sed-Chr1:18009800 Sed08g2090 Sed-Chr8:35029183 1.90E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78668 PF00069 Pkinase 1.30E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2398 K07760 - csv:101208001 617.461