Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2399 ATGGAGAAGGGAGCGACCACTGTTTCCGCCATGGACGCATTCGAGAAGCTCGAGAAGGTCGGTGAAGGAACCTATGGCAAAGTTTACAGGGCTAGGGAGAAGGCCACTGGCAAGATTGTAGCGCTCAAGAAAACCCGCCTTCACGAGGACGAGGAGGGCGTTCCTCCCACCACTCTCAGAGAAGTCTCCATTCTCAGAATGCTTTCTCGTGATCCTCATATTGTAAGGTTGATGGACGTCAAACAAGGGCAGAACAAGGAAGGGAAAACGGTTCTTTACTTGGTGTTTGAGTACATGGATACTGATCTCAAGAAATACATCAAGAGTTTCCGTCATACGGGCGAAAGCGTTCCCGTCGACACTGTCAAGAGTCTTATGTACCAACTCTGCAAGGGCGTTGCCTTCTGTCATGGCCATGGAATCTTGCACAGGGACCTGAAACCACACAATCTGTTGATGGACCGTAAGACTATGATGCTTAAAATTGCAGACCTTGGGCTCGCTCGAGCATTTACCGTGCCAATTAAGAAGTATACTCACGAGATACTGACTCTCTGGTATAGAGCTCCTGAAGTTCTGTTGGGTGCCACACATTACTCCACAGCTGTAGATATGTGGTCTGTTGGGTGCATATTCGCTGAACTTGCTACCAAGCAGCCGCTCTTTCCTGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAGGTATGGCCAGGTGTGAGCAAGCTAATGAACTGGCATGAGTATCCCCAGTGGAGCCCCCGAAGCCTTTCAACAGCCGTCCCGAATTTGGATGATAAGGGGCTTGATCTGCTTGCAGTAAGTCATTTGTTAATACACATTACCATGATTGTTGATGGGATCATGTTTTGA 900 48.22 MEKGATTVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGESVPVDTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQPLFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWSPRSLSTAVPNLDDKGLDLLAVSHLLIHITMIVDGIMF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18009800 18011656 - Sed0009546.2 Sed01g2399 701703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2399 299 SMART serkin_6 14 292 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2399 299 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
Sed01g2399 299 Gene3D Transferase(Phosphotransferase) domain 1 101 287 - -
Sed01g2399 299 SUPERFAMILY Protein kinase-like (PK-like) 9 281 IPR011009 -
Sed01g2399 299 ProSiteProfiles Protein kinase domain profile. 14 299 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2399 299 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2399 299 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Sed01g2399 299 FunFam Cyclin-dependent kinase 2 102 289 - -
Sed01g2399 299 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Sed01g2399 299 Pfam Protein kinase domain 14 247 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2399 299 PANTHER CELL DIVISION PROTEIN KINASE 14 282 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2399 Sed-Chr1:18009800 Sed14g0538 Sed-Chr14:5418258 2.00E-109 dispersed
Sed01g2398 Sed-Chr1:18009800 Sed01g2399 Sed-Chr1:18009800 1.60E-165 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78669 PF00069 Pkinase 1.20E-63 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2399 K07760 - csv:101208001 561.222