Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2400 ATGTCAGGATCTGAGATCGGAGTGATGAGCAGCATGCATTTACCCTTTGCCGCCGCTGCCGCCTCGCCCACCTACCAGTCCTCGGGTGTCGGGGTTTCCGGTAATGCCGGCACCGATGTGTCTGCTCCTGATGCTTTCCCTAACATGAATTCCCAAAGCGAGCCAGTAAAGAGGAAGAGGGGAAGACCTAGGAAGTTTGGATCAGATGGCAGTATGGCAGTCCCGTCCGCCGCCGCAACTCAGTCGAGTGGTGGTTTTTCTCCTCCACCCGCTGCTGCTGCGGCCGGAGGGTTAGCCTCTCCAACTTCTTTGAAGAAAGGCAGAGGCAGACCCCCTGGCTCTGCCAACAAGCAGCAGATACATGCTTTGGGGTCAGCAGGAATGGGATTTACCCCACATGTCATCACCGTGAAAACTGGAGAGGATGTATCCTCGAAGATAATGTCATTTTCACAGAATGGTCCTAGAACGGTATGTGTCCTTAGCGCAAATGGAGCTATATCTAATGTGACTCTACGTCAACCAGCCATGTCAGGTGGAACAGTTACTTACGAGGGGCGATTTGAGATTTTATCACTCTCTGGGTCATATCTCCTCTCTGAGAATGGCGGTCAGCGGAGCCGAACAGGGGGTCTAAGTGTGTCATTGTCTGGACCAGATGGTAGAGTACTAGGTGGTGGGGTTGCTGGTCTTCTAACGGCAGCCTCTCCTGTCCAGGTGGTGGTGGGGAGCTTCGTCAACGATGGGGGACACAAGGAATTGAAACAAGCGAACCAAATAGAACAGCTGCCTGTGGTTGTGACTACTGCACCACATAAGCTTGCTCCAATCCGTGCTGGAATGGCGGGGACGAGCAGCAGCCCACATTCGCATGGGACTCTCAGTGAATCCTCAGGCAGTCCGTTTAATCACAGTGCTGGAGCCTGCAATAGCACCATACCATGGAACTGA 951 53.42 MSGSEIGVMSSMHLPFAAAAASPTYQSSGVGVSGNAGTDVSAPDAFPNMNSQSEPVKRKRGRPRKFGSDGSMAVPSAAATQSSGGFSPPPAAAAAGGLASPTSLKKGRGRPPGSANKQQIHALGSAGMGFTPHVITVKTGEDVSSKIMSFSQNGPRTVCVLSANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVNDGGHKELKQANQIEQLPVVVTTAPHKLAPIRAGMAGTSSSPHSHGTLSESSGSPFNHSAGACNSTIPWN 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18014971 18018226 + Sed0017687.1 Sed01g2400 701704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2400 316 SMART AT_hook_2 57 69 IPR017956 GO:0003677(InterPro)
Sed01g2400 316 SMART AT_hook_2 105 117 IPR017956 GO:0003677(InterPro)
Sed01g2400 316 SUPERFAMILY AF0104/ALDC/Ptd012-like 130 258 - -
Sed01g2400 316 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 246 IPR005175 -
Sed01g2400 316 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 30 297 IPR039605 GO:0003680(InterPro)
Sed01g2400 316 MobiDBLite consensus disorder prediction 19 118 - -
Sed01g2400 316 FunFam AT-hook motif nuclear-localized protein 1-like 132 263 - -
Sed01g2400 316 MobiDBLite consensus disorder prediction 21 35 - -
Sed01g2400 316 MobiDBLite consensus disorder prediction 283 316 - -
Sed01g2400 316 MobiDBLite consensus disorder prediction 279 316 - -
Sed01g2400 316 CDD DUF296 131 245 IPR005175 -
Sed01g2400 316 ProSiteProfiles PPC domain profile profile. 126 266 IPR005175 -
Sed01g2400 316 Gene3D - 132 273 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2400 Sed-Chr1:18014971 Sed13g1199 Sed-Chr13:17102459 1.10E-108 dispersed
Sed01g2395 Sed-Chr1:17997694 Sed01g2400 Sed-Chr1:18014971 4.70E-20 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2400 - - - 0.0