Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2401 ATGGCGCTCAAAGTGCTCTCCGCTCTGGACACTGCCAAGACCCAACTGTACCATTTCAAGGCCATCGTGATCGCGGGCATGGGCCTCTTCACCGACGCCTACGATCTCTTCAGCATCACTCCCATCATGACCCTCATCGGACGTGTCTACTACCACGACCTAAACTACGAAACTCCCGCCACCGTCAAATCCGCTATGTTGGCTGTGGCCCTACTCGGCACGGCGGCGGGTCAACTCGTCTTTGGCATACTCGGCGACCGAGTGGGACGGCGGCGCGTGTATGGGCTGGCATTGGCGCTGATGGTGCTGAGCTCCATCGGATGCGGGTTCTCAATCTGCACCACTAGGAGCTGCGTCCTTGTCAGCCTAGGCTTCTTCCGGTTCCTTCTCGGACTCGGAATTGGAGGAGATTACCCTTTGTCGGCAACCATAATGTCGGAGTTCGCCAACAAGAAGACACGTGGGGCGTTCATAGCCGCGGTGTTCTCGATGCAGGGGCTCGGGATCTTGGCCAGCTCCACCGTGACGATGATCGTGTGTTCCATATTCGATCGGGCCTCGAATTATCCGACAAATAATCGTACGCCAATGGGGGCTGATATTGCGTGGAGGTTGATTCTCATGCTTGGCGCTGTTCCAGCGGCCATGACTTATTACTGGCGGATGATGATGCCCGAAACTGCCAGGTACACAGCTCTAGTAGAGCACAATGTAGCACAAGCAGCAAAGGACATGGAAAAAGTGTTGGATGTATCATTGGCTGATATCATAGAAGATAGCCCTGCGTCCCCTTTACCCCCAAACTTCTCCTTCTTTTCCAACCAATTCCTCCGCCGCCACGGCCGCGACCTCTTCTCCTGCGCCGCCGCTTGGTTTCTTCTCGACGTCGTGTTCTACAGCAGCAACCTCTTCCAATCCAAAATCTACACCAAATTCCTCCACCCCAAACAAAATGTCAACGTGTATCGCGACGCATTCAACGAAGCCAAAATCCAAGCCATCGTTGCCGTATGTTCCACCATCCCCGGCTACTGGGTGTCTGTCTATTTCATCGACCGGTTGGGCCGAGTCAAAATCCAAATCATGGGATTCTTCTTCATGGCTTTTGGCTACTTTGCTATTGCCATTCCCTACAACAAATATTGGGTGTCCGATAAACACAAAATCGGTTTCATGATAATCTATTGCCTCACATTCTTCTTCTCCAACTTCGGCCCAAACACCACCACTTTCATCCTCCCCGCTGAGCTGTTCCCGGCGAGATTCAGATCCACGTGCCATGGAATATCCGGTGCAACCGGAAAACTCGGGGCCATCATCGGGGCTGTTGGATTCTTGTGGGCCTCGAACTCGAAAAGAATTGGGCTGCAGGTATCGCTGCTGATTCTTGGTGGGGTGAGTCTGGCGGGAGTTGCAGTTACGTATTTTTTCATGAGAGAAACGACGGGAAGGTCGTTAGAGGAGAATGAGAATGAGGATGAATACGATGGGATTTGGTTTCTCAGATGCTTTCGCTATAAAACTGCTTGCTCGCTTCCGTCTTCTATCGGTAAAGATCATGACGACATGTCGACTCCTTCTAACTCTACCTCCATGATCTCCATTCAAAGTAGTAGACCCATTCGTTAG 1629 52.06 MALKVLSALDTAKTQLYHFKAIVIAGMGLFTDAYDLFSITPIMTLIGRVYYHDLNYETPATVKSAMLAVALLGTAAGQLVFGILGDRVGRRRVYGLALALMVLSSIGCGFSICTTRSCVLVSLGFFRFLLGLGIGGDYPLSATIMSEFANKKTRGAFIAAVFSMQGLGILASSTVTMIVCSIFDRASNYPTNNRTPMGADIAWRLILMLGAVPAAMTYYWRMMMPETARYTALVEHNVAQAAKDMEKVLDVSLADIIEDSPASPLPPNFSFFSNQFLRRHGRDLFSCAAAWFLLDVVFYSSNLFQSKIYTKFLHPKQNVNVYRDAFNEAKIQAIVAVCSTIPGYWVSVYFIDRLGRVKIQIMGFFFMAFGYFAIAIPYNKYWVSDKHKIGFMIIYCLTFFFSNFGPNTTTFILPAELFPARFRSTCHGISGATGKLGAIIGAVGFLWASNSKRIGLQVSLLILGGVSLAGVAVTYFFMRETTGRSLEENENEDEYDGIWFLRCFRYKTACSLPSSIGKDHDDMSTPSNSTSMISIQSSRPIR 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18018905 18021634 + Sed0020070.1 Sed01g2401 701705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2401 542 FunFam Inorganic phosphate transporter 1-6 17 498 - -
Sed01g2401 542 Pfam Sugar (and other) transporter 23 490 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Sed01g2401 542 CDD MFS_PhT 22 481 - -
Sed01g2401 542 ProSiteProfiles Major facilitator superfamily (MFS) profile. 21 482 IPR020846 GO:0022857(InterPro)
Sed01g2401 542 SUPERFAMILY MFS general substrate transporter 9 492 IPR036259 -
Sed01g2401 542 Gene3D MFS general substrate transporter like domains 17 498 IPR036259 -
Sed01g2401 542 MobiDBLite consensus disorder prediction 517 542 - -
Sed01g2401 542 MobiDBLite consensus disorder prediction 518 542 - -
Sed01g2401 542 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 6 489 - -
Sed01g2401 542 ProSitePatterns Sugar transport proteins signature 2. 129 154 IPR005829 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2401 Sed-Chr1:18018905 Sed05g0108 Sed-Chr5:655102 4.70E-141 dispersed
Sed01g2401 Sed-Chr1:18018905 Sed12g1032 Sed-Chr12:6680763 5.40E-145 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2401 K08176 - csv:101218554 862.448