Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2406 ATGCGTCCCCTTAGGTTCCTCGCCGGCGTCAACTCCTCCGCCACCTCCGACACGGGGGAGCTCCAGAGGTACGACTCCGACTTCGTCATAATCCTCGCCGCTCTTCTCTGCGCCTTGATTTGCGTTCTCGGCCTCGTCGCCGTCGCCCGATGCGCTTGGCTGCGCCGCCTCGCCGGCGATCGCGGCGATTTCACCCGTCCTCCTCCGCCTCCGCCCTCCAACAAAGGCCTCAAGAAGAAGATCCTGAGATCTCTTCCTAAGTACGCCTTCGCCGCCGAGTTTGCCGCTCGGTTCTCGGACTGCGCGATCTGTTTGGCGGAGTTCGCCGTCGGCGATGAAATCCGCGTGCTGCCGCAGTGCGGCCATGGATTTCACGTTTCCTGCATCGACAAATGGTTCAAAACTCACTCCTCCTGTCCTTCGTGCCGCCAGATTCTGGTGGTGAGTCAGTGCCAGAAGTGCGGCGGCGGCGTTTTGCCGGCGAGCTCGAGTTCGAACGGCGGAGGGAGCGAATCGAGAGTAAAAGAGGAAGGAGAAGATAAGAGGAATAATAGGTTCTTACCTTAA 567 59.96 MRPLRFLAGVNSSATSDTGELQRYDSDFVIILAALLCALICVLGLVAVARCAWLRRLAGDRGDFTRPPPPPPSNKGLKKKILRSLPKYAFAAEFAARFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDKWFKTHSSCPSCRQILVVSQCQKCGGGVLPASSSSNGGGSESRVKEEGEDKRNNRFLP 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18042023 18043188 - Sed0005605.1 Sed01g2406 701710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2406 188 Pfam Ring finger domain 100 143 IPR001841 -
Sed01g2406 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 147 IPR013083 -
Sed01g2406 188 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Sed01g2406 188 SUPERFAMILY RING/U-box 82 148 - -
Sed01g2406 188 MobiDBLite consensus disorder prediction 172 188 - -
Sed01g2406 188 MobiDBLite consensus disorder prediction 159 188 - -
Sed01g2406 188 SMART ring_2 101 142 IPR001841 -
Sed01g2406 188 CDD RING-H2_EL5-like 100 143 - -
Sed01g2406 188 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 16 164 IPR052788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2406 Sed-Chr1:18042023 Sed04g1046 Sed-Chr4:14447240 9.90E-38 dispersed
Sed01g2406 Sed-Chr1:18042023 Sed04g2364 Sed-Chr4:37075039 9.70E-17 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2406 - - - 0.0