Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2411 ATGTGGGCATTTTCCAAACACACGCTCTGCGTAGCTCAACCGCCATGGCAGTGGCCAGCGGCCATAACCAAGAGCTCGGATTCTCGTCCCGTTGATCGCCTTCTTCCTCAAATTCGTCCTCAATCCACGGCCAATCAAACAGAGAATGCGAGGCAAGAAGTGTTTTCTCTACCGATTTCAAGAAGATCTGCAATTTTGATCTCTTCGCTACCTTTCACTCTCGTTTCTGTATCTCCGTCCGATGCCAGAGACAGAAGGAACAAGAAGAACATTCCTCTCGAGGATTACATCGCCAGCCCTAATGGATTGAAGTACTATGATATCGAGGAGGGAAAAGGTCCTGCGGCAGAGAAGGGTTCAAGAGTTCAGGTGCACTTTGATTGCATGTATAGAGGGATTACAGCCGTGTCAAGTAGAGAATCTAAATTGTTGGCTGGAAATCGTGTTATCTCCCAGGTTCTTACATTTTGTTTATGTGGCTTTAGTTACACTTATAAAATGCTTAGAGGTATGAAATTCATGTTGGATACCTATGAAACATTAAGGTCCCGTTTAATAAGCATTTGGTTTTTAGTTTTTGGTTTTTGA 588 43.71 MWAFSKHTLCVAQPPWQWPAAITKSSDSRPVDRLLPQIRPQSTANQTENARQEVFSLPISRRSAILISSLPFTLVSVSPSDARDRRNKKNIPLEDYIASPNGLKYYDIEEGKGPAAEKGSRVQVHFDCMYRGITAVSSRESKLLAGNRVISQVLTFCLCGFSYTYKMLRGMKFMLDTYETLRSRLISIWFLVFGF 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18044504 18049203 - Sed0011537.5 Sed01g2411 701715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2411 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP18, CHLOROPLASTIC 37 156 IPR044180 GO:0009543(PANTHER)
Sed01g2411 195 Gene3D - 78 177 IPR046357 GO:0003755(InterPro)
Sed01g2411 195 SUPERFAMILY FKBP-like 82 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2411 K01802 - - csv:101206539 202.986
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2409 Sed-Chr1:18044504 Sed01g2411 Sed-Chr1:18044504 2.40E-84 dispersed
Sed01g2410 Sed-Chr1:18044504 Sed01g2411 Sed-Chr1:18044504 2.00E-84 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g63 Blo01g01645 . . . Bpe02g00299 . . Bma01g02417 . . Cma01g02031 . Car01g01598 . . . . . . . . . . . . . . . . . . Cone4ag2033 Cone7ag1947 . . Lsi04g01829 Csa04g02725 . . . . Bda11g00983 . . . . . Sed01g2411 Cmo01g02086 . . . . . . Cpe02g00023 Bhi09g02841 Tan01g5134 Cmetu07g1872 . Hepe01g2357 Mch11g0041 . Cla11g01840 Cam11g1907 Cec11g1933 Cco11g1943 Clacu11g2070 Cmu11g1876 Cre11g2284 . . Chy07g00411 Cme07g00037
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006911 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 2 1 5 2 1 32