Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2413 ATGATCTTCCCAGGGTCAAATCTGCAAACTGCCAATAAACGTCTTGGGAGCATGTCTTCTACCAGCTTGTTACTCAATCCTGGTTGGGTGGGAAAGGCGAAAAATTCTACATTTAAGCGACCACTTTCAGTTCAAGCTGCATATAGTGATGGTGGACGGTCAAGCAATGCAGGCATTTTTATGGGAGGTTTTGTATTGGGAGGGCTCATAGTTGGCACGCTTGGCTGTGTATATGCCCCTCAGATTAGCAAGGCACTTGCTGGAGCAGACCGAAAGGATTTGATGAGGAAACTTCCCAAGTTCATATATGATGAAGAAAAAGCTTTAGAGAAAACTAGAAAAGTGCTGGCTCAAAAGATTGAACAGTTGAACTCTGCCATTGATGAGGTTTCTACTCAGCTCCGAACAGAAGATTCCCCAAATGGAGTGGCTGTGAACTCTGATGAAGTTGAACCTGCCATTTGA 465 44.3 MIFPGSNLQTANKRLGSMSSTSLLLNPGWVGKAKNSTFKRPLSVQAAYSDGGRSSNAGIFMGGFVLGGLIVGTLGCVYAPQISKALAGADRKDLMRKLPKFIYDEEKALEKTRKVLAQKIEQLNSAIDEVSTQLRTEDSPNGVAVNSDEVEPAI 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18050836 18058765 + Sed0020344.2 Sed01g2413 701717

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2413 154 Coils Coil 106 133 - -
Sed01g2413 154 MobiDBLite consensus disorder prediction 132 154 - -
Sed01g2413 154 PANTHER LOW-DENSITY RECEPTOR-LIKE PROTEIN 5 153 IPR040377 GO:0009535(PANTHER)|GO:0009706(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2413 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2413 Sed-Chr1:18050836 Sed05g3665 Sed-Chr5:44842665 4.60E-17 dispersed
Sed01g2412 Sed-Chr1:18050836 Sed01g2413 Sed-Chr1:18050836 1.70E-76 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g67 Blo01g01644 . . . Bpe02g00300 . . . . . Cma01g02030 Cma09g00035 Car01g01597 . . Cpe06g00009 . . . . . . . . . . . . . . . Cone4ag2031 Cone7ag1946 . . . Csa04g02724 . . . . Bda11g00982 . . . . . Sed01g2413 Cmo01g02085 Cmo09g00036 . . . Car09g00030 . Cpe02g00024 Bhi09g02842 Tan01g5132 Cmetu07g1199 . Hepe01g2356 . . Cla11g01839 Cam11g1906 Cec11g1932 Cco11g1942 Clacu11g2069 Cmu11g1875 Cre11g2283 . . Chy07g00410 Cme07g00038
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008236 1 1 1 0 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 0 0 2 1 2 30