Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2415 ATGCCCAAACACAAGACTTCCTACTCTGATTCCATGTTGAAATATAGGCTGGATGTTGCTGAGTTCAATGGGCTAAAATCTGCTGGCCTGACCTTCTCCAACAATGGCAGAGAAGGATCTTTCTTCGACACCGTGGCTGCTCAACTTACTCCCAAGGCAGTAGGATCATCTCCTGTTAGGGGAGAAACTGTGGCTAAACTCAAGGTTGCAATCAATGGATTTGGACGTATTGGTCGAAACTTTCTGCGGTGCTGGCATGGCAGGAAAGACTCGCCTCTGGACGTTGTCGTCGTCAATGACAGTGGCGGTGTCAAGAATGCCTCCCACTTGCTAAAATACGATTCCATGCTGGGAACTTTCAAAGCAGATGTGAAAATTGTGGACAATGAAACCATATCTGTTGATGGTAAGCCAATCAAGGTTGTCTCAAGCAGGGACCCACTCAAGCTTCCTTGGGGCGAGCTTGGCATTGACATCGTTATCGAGGGTACAGGAGTGTTTGTGGATGGCCCAGGTGCAGGGAAACACATTCAAGCAGGTGCAAAGAAGGTTATTATCACTGCTCCTGCAAAAGGTGCTGATATTCCAACATATGTTGTCGGGGTGAATGAAAAAGATTACTACCACGATGTCGCTAACATCATGAGCAATGCTTCTTGTACAACCAATTGCCTTGCTCCTTTTGTGAAGATCATTGATGAGGAATTTGGTATTGTGAAGGGAACCATGACAACCACTCACTCCTACACTGGAGACCAGAGACTTTTGGATGCATCACACCGTGACTTGAGAAGAGCCAGGGCTGCAGCTTTGAACATTGTCCCCACAAGCACTGGTGCAGCAAAGGCTGTGTCCCTTGTGCTCCCCCAGCTTAAGGGCAAGCTCAATGGCATTGCACTTCGTGTGCCTACTCCAAATGTTTCAGTCGTTGACCTCGTTGTGAATATTGAGAAGAAAGGCATCTCCGCAGATGATGTCAATGCTGCCTTCAGAAAGGCAGCCGATGGACCATTGAAGGGTGTTTTAGCCGTGTGCGATATCCCTCTCGTTTCTGTGGACTTTAAGTGCACCGATGTTTCCTCCACTATTGACTCTTCACTAACAATGGTAATGGGAGATGATATGCTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAAAGAGTTGTCGACTTGGCTCATTTGGTGGCAAACAAATGGCCGGGAGCAGAAGCGGGATCGGGGAAAAGCGGAGATCCATTGGAGGACTTCTGCCAGACTAACCCAGCTGACGAAGAGTGCAAAGTTTATGAAGCTTAG 1308 47.86 MPKHKTSYSDSMLKYRLDVAEFNGLKSAGLTFSNNGREGSFFDTVAAQLTPKAVGSSPVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKPIKVVSSRDPLKLPWGELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYYHDVANIMSNASCTTNCLAPFVKIIDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNIEKKGISADDVNAAFRKAADGPLKGVLAVCDIPLVSVDFKCTDVSSTIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLAHLVANKWPGAEAGSGKSGDPLEDFCQTNPADEECKVYEA 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18060159 18062848 + Sed0007215.2 Sed01g2415 701719

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2415 435 SMART gp_dh_n_7 67 220 IPR020828 GO:0051287(InterPro)
Sed01g2415 435 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 66 236 IPR036291 -
Sed01g2415 435 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 68 394 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Sed01g2415 435 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 68 169 IPR020828 GO:0051287(InterPro)
Sed01g2415 435 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 220 383 - -
Sed01g2415 435 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 225 382 IPR020829 GO:0016620(InterPro)
Sed01g2415 435 FunFam Glyceraldehyde-3-phosphate dehydrogenase 219 384 - -
Sed01g2415 435 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 297 314 IPR020831 GO:0016620(InterPro)
Sed01g2415 435 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 338 353 IPR020831 GO:0016620(InterPro)
Sed01g2415 435 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 241 257 IPR020831 GO:0016620(InterPro)
Sed01g2415 435 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 176 189 IPR020831 GO:0016620(InterPro)
Sed01g2415 435 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 214 232 IPR020831 GO:0016620(InterPro)
Sed01g2415 435 FunFam Glyceraldehyde-3-phosphate dehydrogenase 67 227 - -
Sed01g2415 435 Gene3D Dihydrodipicolinate Reductase; domain 2 219 384 - -
Sed01g2415 435 Gene3D - 68 396 - -
Sed01g2415 435 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 2 63 403 IPR020831 GO:0004365(PANTHER)|GO:0006006(PANTHER)|GO:0009507(PANTHER)|GO:0016620(InterPro)|GO:0051287(PANTHER)
Sed01g2415 435 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 218 225 IPR020830 GO:0016620(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2415 K05298 - - csv:101205112 788.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2415 Sed-Chr1:18060159 Sed13g2208 Sed-Chr13:26579400 3.00E-231 dispersed
Sed01g2414 Sed-Chr1:18059701 Sed01g2415 Sed-Chr1:18060159 1.40E-242 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g68 Blo01g01643 . . . Bpe02g00301 . . Bma01g02416 . . Cma01g02029 Cma09g00036 Car01g01596 . . Cpe06g00010 . . . . . . . . . . . . . . . . . Cone17ag1465 Cone20ag0011 Lsi04g01828 Csa04g02722 . . . . Bda11g00981 . . . . . Sed01g2415 Cmo01g02084 Cmo09g00037 . . . Car09g00031 . . Bhi09g02843 Tan01g5131 Cmetu07g0789 . Hepe01g2355 Mch11g0042 . Cla11g01837 Cam11g1904 Cec11g1931 Cco11g1940 Clacu11g2068 Cmu11g1874 Cre11g2282 . . Chy07g00409 Cme07g00039
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007528 1 1 1 1 1 0 2 0 0 1 1 1 2 1 1 2 0 2 1 1 1 1 1 1 1 1 1 3 1 1 32