Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2416 ATGCGGATCCCAGCATTCTTCACGGAACCGAGCTTTGGTTGCAAACGCAAAATTCCAACTGTAGTGCGTTTTTGGGCATGGTTGAAGCTCATGGAGAATAAAACAGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAATTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACTGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGAGTACTATGGTTGGAAAGAGGTCATTGTTATATATGTCGAGGATGATTACGGGTGGAACGGTATTGCAACATTGGGTGATAAACTTTCCGAAAAGCGTTGTAAAATCACATATAAGGTTGGTATTAGTCCAGAATCTAATGTAAACCGATCCCAAGTTATGGATCAACTTGTTAAGGTTGCACCAATGGAATCCAGAGTTATGGTTCTTCATGTGAACCCCAAATTAGGTGCTTTAGTCTTTTCAGTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGCATGGATAGCAACTGATTGGCTTACGTCTCTGCTAGACAGTTTTGTTCCTCCCCCTCCCGAGACCTTGGATTCGATGCAGGGAGTTCTTTCTTTACGCCAGCACACGGTCGAGTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAACAAGTTGACTGGTGGCTCTCTAGGTATGAATACTTATGGTCTATATGCTTATGATTCTGTTTGGGTGGTTGGTCATGCCATGGACAAATTTCTTAATCAAGGTGGGATTGTTACACATTCTAATGATTCTAGGATGAATTTTGGTCAAAAGGGTGATCTTCATCTTGAAGCTATGACTATCTTTGACAGTGGAAATCATCTGCTGGCTAACATATTGGAGAGTGACTTTGTTGGTTTGACCGGTGCCATTAAGTTCGATTCAGATAGATCCCTTGTTCAACCTGCATATGATATTATTAATGTTATTGGAACTGGATCGAGAAGGGTTGGTTACTGGTCAAACTATTCTGGTCTATCAATTGATGCTCCTGAGACACTTTATTCCAAACCGCCTAACCGACACGCGAATCAGAAGCTTTACGAGGTTATATGGCCAGGAAATACAATAGAAAAGCCTAGAGGATGGGTGCTCCCAAACAATGGGAAGCTACTTAACATTGGAGTGCCTCTTCGGGTCAGTTACAAGGAGTTTGTATCACAAATCAAAGGAACAGGAAATTTCCAAGGTTTCTGTATTGACGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCCGTCCCACGCCGATTTATAGCATTTGGCGATGGCCATAAGAATCCAAATTATACAGATCTTGTGTATGGGATTACCACTGGTAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGGTTCTGGGCTAGTTGTTGTGGCCCCTTTTAGAAAACTAAACACTGGTGCTTGGGCATTCTTGCATCCATTTTCTCCAGCCATGTGGATGGTCACTGCCGGTTTCTTCCTTTTTGTTGGGATAGTTGTCTGGATTCTGGAGCATAGGGCAAATGATGAGTTCCGAGGCCCACCTCGAAGACAATGTATCACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAGTTAGCTCTCTTGGCCGCTTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCAAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACCGGAATCGAAACCTTGAGGGAAAGTGATGAACCGATAGGTTTCCAAGTTGGTTCTTTTGCTGAACGTTATCTGACTGAGGAGCTCAACATATCAAGCTCGAGGCTTATTGCTCTCGGATCACCGGAAGCATACGCCAAGGCACTTGAGCTTGGCCCTGATAAGGAGGGAGGCGTTGCTGCTATAGTTGATGAACTACTATATATAGAAAGTTTCCTCTCAAGACAGTGCACATTCAGAGTTGTAGGCCAAGCGTTTACAAAAAGTGGCTGGGGTTTTGCATTCCCGCGAGACTCCCCATTGGCTATCGATATGTCGACTGCCATTTTGCAGCTATCAGAGAGTGGTGATCTGCAGCGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGCTTGGACAGTACAGAGCTAGAATCAGATCGGCTTGAACTTAAGAGCTTTTGGGGCCTCTTTCTAATTTGTGGGGTAGTGTGCTTCATTGCTCTTGCCATATACTGCTTTCAGATTATTCGCAAGCTATGCCATTTAGATTCAAATGAATCTGATATGTCTAGCAACAGTGGATCACATTCTAACCGTCTTCGACGAATTATATCGCTGTTGGATGAGAAGAAAGATCCATTTAAAAGGAAAAGCAAACGAAGGAAAGTCGAGACATCATCTGAAAATGATAAGAACGATTATAATTTAGAGGTAAATCCTTGA 2568 42.72 MRIPAFFTEPSFGCKRKIPTVVRFWAWLKLMENKTVAIIGPQSSVVAHISSQIATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYGWKEVIVIYVEDDYGWNGIATLGDKLSEKRCKITYKVGISPESNVNRSQVMDQLVKVAPMESRVMVLHVNPKLGALVFSVAKSLQMMGNGYAWIATDWLTSLLDSFVPPPPETLDSMQGVLSLRQHTVESDKKKAFLSRWNKLTGGSLGMNTYGLYAYDSVWVVGHAMDKFLNQGGIVTHSNDSRMNFGQKGDLHLEAMTIFDSGNHLLANILESDFVGLTGAIKFDSDRSLVQPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRHANQKLYEVIWPGNTIEKPRGWVLPNNGKLLNIGVPLRVSYKEFVSQIKGTGNFQGFCIDVFTAAVNLLPYAVPRRFIAFGDGHKNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTGSGLVVVAPFRKLNTGAWAFLHPFSPAMWMVTAGFFLFVGIVVWILEHRANDEFRGPPRRQCITILWFSFSTLFFAHKENTVSSLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLRESDEPIGFQVGSFAERYLTEELNISSSRLIALGSPEAYAKALELGPDKEGGVAAIVDELLYIESFLSRQCTFRVVGQAFTKSGWGFAFPRDSPLAIDMSTAILQLSESGDLQRIHDKWLVKSACSLDSTELESDRLELKSFWGLFLICGVVCFIALAIYCFQIIRKLCHLDSNESDMSSNSGSHSNRLRRIISLLDEKKDPFKRKSKRRKVETSSENDKNDYNLEVNP 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18063391 18068087 - Sed0024131.1 Sed01g2416 701720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2416 855 Pfam Receptor family ligand binding region 28 344 IPR001828 -
Sed01g2416 855 PIRSF IGluLR_plant 20 854 IPR017103 -
Sed01g2416 855 Gene3D - 85 359 - -
Sed01g2416 855 Pfam Ligand-gated ion channel 747 778 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 SUPERFAMILY Periplasmic binding protein-like II 383 748 - -
Sed01g2416 855 Gene3D - 28 334 - -
Sed01g2416 855 SMART GluR_14 406 748 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 Pfam Bacterial extracellular solute-binding proteins, family 3 414 525 IPR001638 -
Sed01g2416 855 FunFam Glutamate receptor 85 239 - -
Sed01g2416 855 FunFam Glutamate receptor 642 750 - -
Sed01g2416 855 SUPERFAMILY Periplasmic binding protein-like I 26 396 IPR028082 -
Sed01g2416 855 CDD GluR_Plant 403 746 - -
Sed01g2416 855 Gene3D - 712 745 - -
Sed01g2416 855 Gene3D - 514 648 - -
Sed01g2416 855 MobiDBLite consensus disorder prediction 826 855 - -
Sed01g2416 855 FunFam Glutamate receptor 516 646 - -
Sed01g2416 855 Gene3D - 676 711 - -
Sed01g2416 855 FunFam Glutamate receptor 400 516 - -
Sed01g2416 855 CDD PBP1_GABAb_receptor_plant 28 360 IPR044440 -
Sed01g2416 855 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 817 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Sed01g2416 855 Gene3D - 411 513 - -
Sed01g2416 855 PRINTS Metabotropic glutamate GPCR signature 38 64 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 PRINTS Metabotropic glutamate GPCR signature 105 122 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 PRINTS Metabotropic glutamate GPCR signature 70 89 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 PRINTS Metabotropic glutamate GPCR signature 89 105 IPR000337 GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro)
Sed01g2416 855 MobiDBLite consensus disorder prediction 826 846 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2416 Sed-Chr1:18063391 Sed13g2207 Sed-Chr13:26573312 0.00E+00 dispersed
Sed01g2416 Sed-Chr1:18063391 Sed01g2417 Sed-Chr1:18063391 0.00E+00 tandem
Sed01g2416 Sed-Chr1:18063391 Sed13g2206 Sed-Chr13:26573312 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2416 K05387 - csv:101204862 1441.4