Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2416 | ATGCGGATCCCAGCATTCTTCACGGAACCGAGCTTTGGTTGCAAACGCAAAATTCCAACTGTAGTGCGTTTTTGGGCATGGTTGAAGCTCATGGAGAATAAAACAGTTGCCATCATAGGCCCCCAATCTTCTGTGGTTGCCCACATTTCATCCCAAATTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTTCAGCTACTGATCCTACTCTCTCCGCCCTTCAGTTTCCCTTTTTTGTGAGGGCTGCACAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGAGTACTATGGTTGGAAAGAGGTCATTGTTATATATGTCGAGGATGATTACGGGTGGAACGGTATTGCAACATTGGGTGATAAACTTTCCGAAAAGCGTTGTAAAATCACATATAAGGTTGGTATTAGTCCAGAATCTAATGTAAACCGATCCCAAGTTATGGATCAACTTGTTAAGGTTGCACCAATGGAATCCAGAGTTATGGTTCTTCATGTGAACCCCAAATTAGGTGCTTTAGTCTTTTCAGTGGCTAAATCCCTTCAAATGATGGGCAATGGATATGCATGGATAGCAACTGATTGGCTTACGTCTCTGCTAGACAGTTTTGTTCCTCCCCCTCCCGAGACCTTGGATTCGATGCAGGGAGTTCTTTCTTTACGCCAGCACACGGTCGAGTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAACAAGTTGACTGGTGGCTCTCTAGGTATGAATACTTATGGTCTATATGCTTATGATTCTGTTTGGGTGGTTGGTCATGCCATGGACAAATTTCTTAATCAAGGTGGGATTGTTACACATTCTAATGATTCTAGGATGAATTTTGGTCAAAAGGGTGATCTTCATCTTGAAGCTATGACTATCTTTGACAGTGGAAATCATCTGCTGGCTAACATATTGGAGAGTGACTTTGTTGGTTTGACCGGTGCCATTAAGTTCGATTCAGATAGATCCCTTGTTCAACCTGCATATGATATTATTAATGTTATTGGAACTGGATCGAGAAGGGTTGGTTACTGGTCAAACTATTCTGGTCTATCAATTGATGCTCCTGAGACACTTTATTCCAAACCGCCTAACCGACACGCGAATCAGAAGCTTTACGAGGTTATATGGCCAGGAAATACAATAGAAAAGCCTAGAGGATGGGTGCTCCCAAACAATGGGAAGCTACTTAACATTGGAGTGCCTCTTCGGGTCAGTTACAAGGAGTTTGTATCACAAATCAAAGGAACAGGAAATTTCCAAGGTTTCTGTATTGACGTGTTTACAGCTGCTGTAAACTTATTACCTTATGCCGTCCCACGCCGATTTATAGCATTTGGCGATGGCCATAAGAATCCAAATTATACAGATCTTGTGTATGGGATTACCACTGGTAAATTTGATGCTGTTGTTGGAGACATAGCCATTGTCACAAGCCGTACAAGGCTTGTGGATTTTACTCTGCCATATACTGGTTCTGGGCTAGTTGTTGTGGCCCCTTTTAGAAAACTAAACACTGGTGCTTGGGCATTCTTGCATCCATTTTCTCCAGCCATGTGGATGGTCACTGCCGGTTTCTTCCTTTTTGTTGGGATAGTTGTCTGGATTCTGGAGCATAGGGCAAATGATGAGTTCCGAGGCCCACCTCGAAGACAATGTATCACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAGTTAGCTCTCTTGGCCGCTTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATTATAAATTCTAGCTACACTGCAAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACCGGAATCGAAACCTTGAGGGAAAGTGATGAACCGATAGGTTTCCAAGTTGGTTCTTTTGCTGAACGTTATCTGACTGAGGAGCTCAACATATCAAGCTCGAGGCTTATTGCTCTCGGATCACCGGAAGCATACGCCAAGGCACTTGAGCTTGGCCCTGATAAGGAGGGAGGCGTTGCTGCTATAGTTGATGAACTACTATATATAGAAAGTTTCCTCTCAAGACAGTGCACATTCAGAGTTGTAGGCCAAGCGTTTACAAAAAGTGGCTGGGGTTTTGCATTCCCGCGAGACTCCCCATTGGCTATCGATATGTCGACTGCCATTTTGCAGCTATCAGAGAGTGGTGATCTGCAGCGGATTCATGACAAATGGCTAGTGAAAAGTGCCTGCAGCTTGGACAGTACAGAGCTAGAATCAGATCGGCTTGAACTTAAGAGCTTTTGGGGCCTCTTTCTAATTTGTGGGGTAGTGTGCTTCATTGCTCTTGCCATATACTGCTTTCAGATTATTCGCAAGCTATGCCATTTAGATTCAAATGAATCTGATATGTCTAGCAACAGTGGATCACATTCTAACCGTCTTCGACGAATTATATCGCTGTTGGATGAGAAGAAAGATCCATTTAAAAGGAAAAGCAAACGAAGGAAAGTCGAGACATCATCTGAAAATGATAAGAACGATTATAATTTAGAGGTAAATCCTTGA | 2568 | 42.72 | MRIPAFFTEPSFGCKRKIPTVVRFWAWLKLMENKTVAIIGPQSSVVAHISSQIATEFQVPLVSFSATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVEYYGWKEVIVIYVEDDYGWNGIATLGDKLSEKRCKITYKVGISPESNVNRSQVMDQLVKVAPMESRVMVLHVNPKLGALVFSVAKSLQMMGNGYAWIATDWLTSLLDSFVPPPPETLDSMQGVLSLRQHTVESDKKKAFLSRWNKLTGGSLGMNTYGLYAYDSVWVVGHAMDKFLNQGGIVTHSNDSRMNFGQKGDLHLEAMTIFDSGNHLLANILESDFVGLTGAIKFDSDRSLVQPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRHANQKLYEVIWPGNTIEKPRGWVLPNNGKLLNIGVPLRVSYKEFVSQIKGTGNFQGFCIDVFTAAVNLLPYAVPRRFIAFGDGHKNPNYTDLVYGITTGKFDAVVGDIAIVTSRTRLVDFTLPYTGSGLVVVAPFRKLNTGAWAFLHPFSPAMWMVTAGFFLFVGIVVWILEHRANDEFRGPPRRQCITILWFSFSTLFFAHKENTVSSLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLYSPITGIETLRESDEPIGFQVGSFAERYLTEELNISSSRLIALGSPEAYAKALELGPDKEGGVAAIVDELLYIESFLSRQCTFRVVGQAFTKSGWGFAFPRDSPLAIDMSTAILQLSESGDLQRIHDKWLVKSACSLDSTELESDRLELKSFWGLFLICGVVCFIALAIYCFQIIRKLCHLDSNESDMSSNSGSHSNRLRRIISLLDEKKDPFKRKSKRRKVETSSENDKNDYNLEVNP | 855 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18063391 | 18068087 | - | Sed0024131.1 | Sed01g2416 | 701720 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2416 | 855 | Pfam | Receptor family ligand binding region | 28 | 344 | IPR001828 | - | |
Sed01g2416 | 855 | PIRSF | IGluLR_plant | 20 | 854 | IPR017103 | - | |
Sed01g2416 | 855 | Gene3D | - | 85 | 359 | - | - | |
Sed01g2416 | 855 | Pfam | Ligand-gated ion channel | 747 | 778 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | SUPERFAMILY | Periplasmic binding protein-like II | 383 | 748 | - | - | |
Sed01g2416 | 855 | Gene3D | - | 28 | 334 | - | - | |
Sed01g2416 | 855 | SMART | GluR_14 | 406 | 748 | IPR001320 | GO:0015276(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | Pfam | Bacterial extracellular solute-binding proteins, family 3 | 414 | 525 | IPR001638 | - | |
Sed01g2416 | 855 | FunFam | Glutamate receptor | 85 | 239 | - | - | |
Sed01g2416 | 855 | FunFam | Glutamate receptor | 642 | 750 | - | - | |
Sed01g2416 | 855 | SUPERFAMILY | Periplasmic binding protein-like I | 26 | 396 | IPR028082 | - | |
Sed01g2416 | 855 | CDD | GluR_Plant | 403 | 746 | - | - | |
Sed01g2416 | 855 | Gene3D | - | 712 | 745 | - | - | |
Sed01g2416 | 855 | Gene3D | - | 514 | 648 | - | - | |
Sed01g2416 | 855 | MobiDBLite | consensus disorder prediction | 826 | 855 | - | - | |
Sed01g2416 | 855 | FunFam | Glutamate receptor | 516 | 646 | - | - | |
Sed01g2416 | 855 | Gene3D | - | 676 | 711 | - | - | |
Sed01g2416 | 855 | FunFam | Glutamate receptor | 400 | 516 | - | - | |
Sed01g2416 | 855 | CDD | PBP1_GABAb_receptor_plant | 28 | 360 | IPR044440 | - | |
Sed01g2416 | 855 | PANTHER | IONOTROPIC GLUTAMATE RECEPTOR | 33 | 817 | IPR015683 | GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER) | |
Sed01g2416 | 855 | Gene3D | - | 411 | 513 | - | - | |
Sed01g2416 | 855 | PRINTS | Metabotropic glutamate GPCR signature | 38 | 64 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | PRINTS | Metabotropic glutamate GPCR signature | 105 | 122 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | PRINTS | Metabotropic glutamate GPCR signature | 70 | 89 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | PRINTS | Metabotropic glutamate GPCR signature | 89 | 105 | IPR000337 | GO:0004930(InterPro)|GO:0007186(InterPro)|GO:0016020(InterPro) | |
Sed01g2416 | 855 | MobiDBLite | consensus disorder prediction | 826 | 846 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2416 | Sed-Chr1:18063391 | Sed13g2207 | Sed-Chr13:26573312 | 0.00E+00 | dispersed | |
Sed01g2416 | Sed-Chr1:18063391 | Sed01g2417 | Sed-Chr1:18063391 | 0.00E+00 | tandem | |
Sed01g2416 | Sed-Chr1:18063391 | Sed13g2206 | Sed-Chr13:26573312 | 0.00E+00 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2416 | K05387 | - | csv:101204862 | 1441.4 |