Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2420 ATGACTACTGGTATAAAATTTTCACCTCCCCTTGCCCGATTAGAAGGTGGCGGATACAATCAGGACAATGTATCACTAACAAAGGACGCAAGTTCTGATAGCTTTGTTAGTTTGAAACAGGTTACCACTGGTAAACCTCCCCGACACCTCTCGTCCATGCGGCATAGTCTGAGCTTCATAAAGCTGCTAGACCAAGTTGATTTAGAAGCCATATTAATCTACTTACTTGTCCATAAACACTCCAGAGCTTGGATGTCGGAACTCTTGAAAATTGTTGAACATATCCATGCATGTGCAGATTTCAGTTCTCCTGGAGCTTTCTATGGTGTGAGTATCACTTTTCACCTTGATAACACTATGACCTGTAAATAG 372 41.67 MTTGIKFSPPLARLEGGGYNQDNVSLTKDASSDSFVSLKQVTTGKPPRHLSSMRHSLSFIKLLDQVDLEAILIYLLVHKHSRAWMSELLKIVEHIHACADFSSPGAFYGVSITFHLDNTMTCK 123
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18074297 18076719 + Sed0027823.3 Sed01g2420 701724

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2420 K14803 - - csv:101205355 116.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2418 Sed-Chr1:18074297 Sed01g2420 Sed-Chr1:18074297 6.10E-58 dispersed
Sed01g2420 Sed-Chr1:18074297 Sed13g2205 Sed-Chr13:26558900 1.60E-28 dispersed
Sed01g2419 Sed-Chr1:18074297 Sed01g2420 Sed-Chr1:18074297 5.10E-33 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g72 Blo01g01641 Blo12g00848 . Bda03g00327 Bpe02g00303 Bpe04g00287 Bma04g00294 Bma01g02414 . . Cma01g02027 Cma09g00041 Car01g01594 . . Cpe06g00012 . . . . . . . . . . . . . . . . Cone7ag1942 . . Lsi04g01822 Csa04g02719 . . . . Bda11g00979 . . . . . Sed01g2420 Cmo01g02082 Cmo09g00041 . . . Car09g00033 . Cpe02g00026 Bhi09g02846 Tan01g5129 Cmetu07g1792 . Hepe01g2353 Mch11g0044 . Cla11g01835 Cam11g1902 Cec11g1929 Cco11g1938 Clacu11g2066 Cmu11g1871 Cre11g2280 . . Chy07g00407 Cme07g00041