Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2423 ATGGAGTGGCAGAACCAGAACAACCCAAGTGAGCAATTGCAGATGCAAATGCAAATGCAGGTTGAGCAATTGAGCAACGGCGATGGAGTTGGAGTTGGTGGGCTGTATGTGAAGGTGATGACTGATGAGCAGATGGAGCTCCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTTGTGGAGATGCACAAAGCAATCACCGCCCAGCAGGACCTTGCCGGAATGAGGCTAGGGGACCTGTACTGCGATCCAATAATGGCATCCGCTGCTGGTCACAAGATAACTTCTAGGCAGAGGTGGACACCGACGCCTGTGCAGCTTCAAATTCTGGAGCAGATCTTTGATAAGGGCAATGGGACCCCAAGCAAGGAGAAGATCAAGGAAATAACTCTGCAGTTGACACAACATGGTCAAATTTCAGAAGCAAATGTTTATAATTGGTTTCAGAACAGAAGGGCTCGTTCAAAAAGAAAGCAGGCAAATTCAGCACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGACAAAAAGACAAAACCTGAAACATTCCAAACTTATGAACATTTCATTTCAAAATCCAACAACCTGTATTCTCAGGGATCTAATGTAGGAGCGGAAATGCTCAACTTTGATGCACCATCATCAAATAAGGGGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGGCCACAACACAGAATCACAGAAATAATCTGTCAAATGATAAGATGAACGTACCTGCTGATGGCTACACCTCTTATCATCCTTGTGAAGGATACCATTTGGTTGAATGA 831 44.89 MEWQNQNNPSEQLQMQMQMQVEQLSNGDGVGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGDLYCDPIMASAAGHKITSRQRWTPTPVQLQILEQIFDKGNGTPSKEKIKEITLQLTQHGQISEANVYNWFQNRRARSKRKQANSAPNNADSEPETEVDSPKDKKTKPETFQTYEHFISKSNNLYSQGSNVGAEMLNFDAPSSNKGEPMFQSFGSGHISQMATTQNHRNNLSNDKMNVPADGYTSYHPCEGYHLVE 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18090858 18093565 - Sed0028050.1 Sed01g2423 701727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2423 276 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 MobiDBLite consensus disorder prediction 156 188 - -
Sed01g2423 276 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 271 IPR044559 GO:0003700(InterPro)
Sed01g2423 276 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 Gene3D - 102 167 - -
Sed01g2423 276 SUPERFAMILY Homeodomain-like 98 162 IPR009057 -
Sed01g2423 276 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2423 Sed-Chr1:18090858 Sed01g2425 Sed-Chr1:18090858 2.90E-94 dispersed
Sed01g2423 Sed-Chr1:18090858 Sed01g2424 Sed-Chr1:18090858 2.90E-94 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37290 PF00046 Homeodomain 3.90E-18 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2423 - - - 0.0