Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2423 ATGGAGTGGCAGAACCAGAACAACCCAAGTGAGCAATTGCAGATGCAAATGCAAATGCAGGTTGAGCAATTGAGCAACGGCGATGGAGTTGGAGTTGGTGGGCTGTATGTGAAGGTGATGACTGATGAGCAGATGGAGCTCCTCAGGCAGCAGATCTCTGTCTATGCTTCCATTTGTGAGCAGCTTGTGGAGATGCACAAAGCAATCACCGCCCAGCAGGACCTTGCCGGAATGAGGCTAGGGGACCTGTACTGCGATCCAATAATGGCATCCGCTGCTGGTCACAAGATAACTTCTAGGCAGAGGTGGACACCGACGCCTGTGCAGCTTCAAATTCTGGAGCAGATCTTTGATAAGGGCAATGGGACCCCAAGCAAGGAGAAGATCAAGGAAATAACTCTGCAGTTGACACAACATGGTCAAATTTCAGAAGCAAATGTTTATAATTGGTTTCAGAACAGAAGGGCTCGTTCAAAAAGAAAGCAGGCAAATTCAGCACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGACAAAAAGACAAAACCTGAAACATTCCAAACTTATGAACATTTCATTTCAAAATCCAACAACCTGTATTCTCAGGGATCTAATGTAGGAGCGGAAATGCTCAACTTTGATGCACCATCATCAAATAAGGGGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGGCCACAACACAGAATCACAGAAATAATCTGTCAAATGATAAGATGAACGTACCTGCTGATGGCTACACCTCTTATCATCCTTGTGAAGGATACCATTTGGTTGAATGA 831 44.89 MEWQNQNNPSEQLQMQMQMQVEQLSNGDGVGVGGLYVKVMTDEQMELLRQQISVYASICEQLVEMHKAITAQQDLAGMRLGDLYCDPIMASAAGHKITSRQRWTPTPVQLQILEQIFDKGNGTPSKEKIKEITLQLTQHGQISEANVYNWFQNRRARSKRKQANSAPNNADSEPETEVDSPKDKKTKPETFQTYEHFISKSNNLYSQGSNVGAEMLNFDAPSSNKGEPMFQSFGSGHISQMATTQNHRNNLSNDKMNVPADGYTSYHPCEGYHLVE 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18090858 18093565 - Sed0028050.1 Sed01g2423 701727

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2423 276 Pfam Homeodomain 100 160 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 SMART HOX_1 98 165 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 MobiDBLite consensus disorder prediction 156 188 - -
Sed01g2423 276 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 271 IPR044559 GO:0003700(InterPro)
Sed01g2423 276 CDD homeodomain 100 162 IPR001356 GO:0003677(InterPro)
Sed01g2423 276 Gene3D - 102 167 - -
Sed01g2423 276 SUPERFAMILY Homeodomain-like 98 162 IPR009057 -
Sed01g2423 276 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2423 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2423 Sed-Chr1:18090858 Sed01g2425 Sed-Chr1:18090858 2.90E-94 dispersed
Sed01g2423 Sed-Chr1:18090858 Sed01g2424 Sed-Chr1:18090858 2.90E-94 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed01g1765 . 1 193 Wox Gene Family AT3G18010 53.8 1.1e-45 181.8
Sed08g2754 . 1 204 Wox Gene Family AT3G18010 50.9 2.4e-45 180.6
Sed11g0934 . 5 158 Wox Gene Family AT1G46480 67.1 8.0e-51 198.0
Sed10g1226 . 1 155 Wox Gene Family AT1G46480 64.5 7.5e-49 191.4
Sed10g0273 . 1 376 Wox Gene Family AT2G33880 50.6 3.5e-69 260.0
Sed04g1018 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1016 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed04g1017 . 1 268 Wox Gene Family AT4G35550 51.7 7.5e-71 265.0
Sed01g2423 . 1 162 Wox Gene Family AT4G35550 64.8 5.4e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37290 PF00046 Homeodomain 3.90E-18 CL0123 Sed TF