Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2425 ATGAGGCTAGGGGACCTGTACTGCGATCCAATAATGGCATCCGCTGCTGGTCACAAGATAACTTCTAGGCAGAGGTGGACACCGACGCCTGTGCAGCTTCAAATTCTGGAGCAGATCTTTGATAAGGGCAATGGGACCCCAAGCAAGGAGAAGATCAAGGAAATAACTCTGCAGTTGACACAACATGGTCAAATTTCAGAAGCAAATGTTTATAATTGGTTTCAGAACAGAAGGGCTCGTTCAAAAAGAAAGCAGGCAAATTCAGCACCAAATAATGCAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGACAAAAAGACAAAACCTGAAACATTCCAAACTTATGAACATTTCATTTCAAAATCCAACAACCTGTATTCTCAGGGATCTAATGTAGGAGCGGAAATGCTCAACTTTGATGCACCATCATCAAATAAGGGGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGGCCACAACACAGAATCACAGAAATAATCTGTCAAATGATAAGATGAACGTACCTGCTGATGGCTACACCTCTTATCATCCTTGTGAAGGATACCATTTGGTTGAATGA 600 42.33 MRLGDLYCDPIMASAAGHKITSRQRWTPTPVQLQILEQIFDKGNGTPSKEKIKEITLQLTQHGQISEANVYNWFQNRRARSKRKQANSAPNNADSEPETEVDSPKDKKTKPETFQTYEHFISKSNNLYSQGSNVGAEMLNFDAPSSNKGEPMFQSFGSGHISQMATTQNHRNNLSNDKMNVPADGYTSYHPCEGYHLVE 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18090858 18093565 - Sed0028050.3 Sed01g2425 701729

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2425 199 MobiDBLite consensus disorder prediction 79 111 - -
Sed01g2425 199 PANTHER WUSCHEL-RELATED HOMEOBOX 13 1 195 IPR044559 GO:0003700(InterPro)
Sed01g2425 199 SMART HOX_1 21 88 IPR001356 GO:0003677(InterPro)
Sed01g2425 199 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677(InterPro)
Sed01g2425 199 Pfam Homeodomain 23 83 IPR001356 GO:0003677(InterPro)
Sed01g2425 199 Gene3D - 24 90 - -
Sed01g2425 199 CDD homeodomain 23 85 IPR001356 GO:0003677(InterPro)
Sed01g2425 199 SUPERFAMILY Homeodomain-like 21 85 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2425 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2423 Sed-Chr1:18090858 Sed01g2425 Sed-Chr1:18090858 2.90E-94 dispersed
Sed01g2425 Sed-Chr1:18090858 Sed04g1016 Sed-Chr4:13491584 5.80E-36 dispersed
Sed01g2424 Sed-Chr1:18090858 Sed01g2425 Sed-Chr1:18090858 1.60E-94 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37292 PF00046 Homeodomain 2.10E-18 CL0123 Sed TF