Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2432 ATGGGATCTCCGGTCGGGATGGCGAACCCTAATCTCCCGGCATTTCTCCTTTACGCTCTACTGTTTTCACTCTCCGTTTTTCTCGCCTCTGGATTTTCCTTTCAAATTCCGCCGCCGGCTCTTTTCCCACCGGAGGAATCGCTGCTGCCGTCCGACGCCGTTTCGCTTCTTTCGTTCAAATCCAACGCCGATTTGGACAACAAGCTTCTTTACACCCTCAATGAGCGCTTTGATTACTGTCAATGGCAGGGCGTGAAGTGCGTCCAGGGTCGGGTTGTTCGTCTCGTTCTTCAGTCGTTTGGTCTCCGAGGGGCATTGGCTCCGAACACTGTGTCTAAGCTCGACCAGCTTCGGATCCTCAGCCTCCATAACAACTCGCTCCAAGGACCCATTCCCGACCTCTCCGGCCTCTTCAATTTGAAATCTCTGTTCCTTGGCCGGAACTCCTTCGTCGGCTCATTTCCGCCGTCGATTCTCACTCTCCACCGGCTGCAGACTCTGGATCTTTCTTACAACAACTTTACGGGTCCGCTTTCGGCGAGGCTTTCCTCGTTGGATCGCCTCATTACACTCCGGCTTGAATGGAATGGTTTCAATGGAAGTATTCCGCCGTTGAATCAGTCGTTTCTTGAGGTATTTAATGTCACCGGCAACCATCTTACCGGGAAAATTCCGGTGACCCCTACTCTGTTGCGTTTCAATACGTCGTCGTTTTTCTGGAACCCGGATCTCTGCGGCGAGATCGTCAACAAGGCATGCCATTTCCCCGCTCCGTTCTTTGAAGATTCCAATGCCACTGCTCCGTCTATCTCTTCCGTCCAAGGCACTCAGTCACAGGATGCGGTTCTCGCTCCGGTCACTCGTGTGAAGCGCAAGGAGACTGGTATGATCTTGGGACTTTCTGTTGGTGCGGCAGTTTTAGTTGCAGGTCTTTTATGTTTCTTCATAGCAGCCAAAACCCAAAGAAGACAAGCTGTTTCAAAGGAAGCAATGGCTGAATTTGAACCCGGAATTGGTTATGCCCCAGCTTTCGCAATTGACGAGCGAGGCGACGGGAAGGGCGGATTTGGAGCTAAAGTGAATGAAATTGAAGAAATTCCAAAAGCTCAGAAGAGTGGTAGTCTTATATTTTGTGAAGGGGAGGCAGAGTTATTCAGCTTAGAGCAGTTAATGAGGGCTTCGGCGGAGCTGCTTGGTAGAGGCACATTGGGAGTTACATACAAAGCAGTGCTCTGCAACCAGTTAATCGTGACAGTCAAGCGGCTTGATGCTACGAAGACTGCCTTAACGAGCAGCGAAGCGTTCGACCGGCATTTGAAAGTAGTGAGTGAGCTTCGTCATCCCAATTTGGTACTGGTCAGGGCTTACTTTCAAGCCAGTGGGGAGAGGTTAGTGGTCTATGATTACCAGTCTAATGGTAGTCTTTACAACCTCATTCACGGTTCAAGATCAGCAAGGGCTAAGCCTCTTCACTGGACATCTTGCTTGAAGATTGCTGAAGATATAGCTCAGGGCATTGCTTACATACATCAAGCTTCTAAGTTAATCCATGGCAACTTGAAGTCTACTAATGTTCTCCTAGGAGCAGACTTTGAGGCCTGTCTCACAGACTGTGGCCTTTCTATTTTGGCAGAGACCCCTGAAGATCCAGATTCTTCACGCTACCATGCCCCCGAAACTCGAAAGTCTAGCCGCAATGCCACCCACAAGAGCGACATCTACTCCTTTGGTGTCCTCTTGCTGGAGCTATTGACAGGAAGACATCCTTCACACCATCCATTTCTCGAGCCAACTGATGTGCCAGAATGGGTAAGGGCAGTTAGGGAAGATGAAGGTGGGGATTGTAACCAACTTGAAATGCTTACTGAGGTGGCTAGCATCTGTAGTACTACTTCTCCTGAACAGAGGCCCCCCATCTGGCAAGTTTTGAAAATGATACTGGAGATCAAAGAGAGTGTCATGGTAGAGGATAGCGAATCTAGTGGCTTTTAA 1992 49.55 MGSPVGMANPNLPAFLLYALLFSLSVFLASGFSFQIPPPALFPPEESLLPSDAVSLLSFKSNADLDNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGALAPNTVSKLDQLRILSLHNNSLQGPIPDLSGLFNLKSLFLGRNSFVGSFPPSILTLHRLQTLDLSYNNFTGPLSARLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVFNVTGNHLTGKIPVTPTLLRFNTSSFFWNPDLCGEIVNKACHFPAPFFEDSNATAPSISSVQGTQSQDAVLAPVTRVKRKETGMILGLSVGAAVLVAGLLCFFIAAKTQRRQAVSKEAMAEFEPGIGYAPAFAIDERGDGKGGFGAKVNEIEEIPKAQKSGSLIFCEGEAELFSLEQLMRASAELLGRGTLGVTYKAVLCNQLIVTVKRLDATKTALTSSEAFDRHLKVVSELRHPNLVLVRAYFQASGERLVVYDYQSNGSLYNLIHGSRSARAKPLHWTSCLKIAEDIAQGIAYIHQASKLIHGNLKSTNVLLGADFEACLTDCGLSILAETPEDPDSSRYHAPETRKSSRNATHKSDIYSFGVLLLELLTGRHPSHHPFLEPTDVPEWVRAVREDEGGDCNQLEMLTEVASICSTTSPEQRPPIWQVLKMILEIKESVMVEDSESSGF 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18128318 18130309 - Sed0017125.1 Sed01g2432 701736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2432 663 SUPERFAMILY Protein kinase-like (PK-like) 396 651 IPR011009 -
Sed01g2432 663 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 51 651 IPR046959 -
Sed01g2432 663 ProSiteProfiles Protein kinase domain profile. 392 654 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2432 663 Pfam Protein tyrosine and serine/threonine kinase 396 644 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2432 663 SUPERFAMILY L domain-like 51 243 - -
Sed01g2432 663 FunFam Probable inactive receptor kinase At5g67200 51 161 - -
Sed01g2432 663 Gene3D Phosphorylase Kinase; domain 1 359 469 - -
Sed01g2432 663 Pfam Leucine Rich Repeat 163 185 IPR001611 GO:0005515(InterPro)
Sed01g2432 663 Pfam Leucine Rich Repeat 116 133 IPR001611 GO:0005515(InterPro)
Sed01g2432 663 Gene3D Ribonuclease Inhibitor 52 160 IPR032675 -
Sed01g2432 663 Gene3D Ribonuclease Inhibitor 161 237 IPR032675 -
Sed01g2432 663 Gene3D Transferase(Phosphotransferase) domain 1 471 661 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2432 Sed-Chr1:18128318 Sed04g3060 Sed-Chr4:41636621 3.10E-110 dispersed
Sed01g2432 Sed-Chr1:18128318 Sed04g3059 Sed-Chr4:41636621 3.10E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78670 PF07714 PK_Tyr_Ser-Thr 3.00E-31 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2432 - - - 0.0