Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2434 ATGGATGATTGTATGTTTTCACCAGCTACAATGCTGGAGGCTCCAGCTGATACAGCCATGGATTTAGACTACATGGATGGGCTGCTTTTGGATTGTTGCTGGTTAGAAACTGCAGATGGTGCTGAGTTTTTTCATCCTAGCCCCTCAAGTTTTGGTGCTAACTTAGACCCTTGGGTTGGATGGAATGCTTCAGAGATGAATGGTGATTTTAACACGAGCTTGATTACAAGGAGTAATCAAGAAGAACAGAGGAAAATCTCGACCGATGAGGCATCTCTCAGGCCGGAAAGAGTTGATGTTGGGCAAGAGGAATGTTCTGGTCAATTAGAAAACAATGCACTTGTAGGTTCTGAATTGTGCAGAAGATTGTGGACTGGACCTGGGGAGCTTCTGGGTTCTGCATCTTCTGTGATGGAGAGATTAATCAGGGCGGTCGGGTATATCAAAGATTTTGTAAGAGACAAAGATGTTCTTGTTCAAGTTTGGGTGCCTATAAGTAGAGGTGGAAGAAATGTTCTCATCACAAATCAACTGCCATTCTCTCAGAATTCCAGCTGCACAAGACTTGCAAAATACCGGGACATCTCTGTGACATATGAATTCACAGCTGACGAGGATTCTAATAACTCTTTGGGATTGCCCGGTCGGGTCTTCTCAAGAAAGGTTCCAGAGTGGACTCCTGATGTTCGATTCTTTACAAGCGATGAGTACCCAAGAGTCAATCATGCTCATGAGCACGATGTACGTGGAACTATAGCCTTTCCCATTTTTGAACAAGGCAGCAAGAATTGTTTAGGGGTCATTGAAGTTGTCATGGTTACCCAACAGATCAAATATGGTTCGGAACTTGAGAGTGTTTGCAAAGCCCTTGAGGCAGTCAAGCTTAGGAGCTCTGATGTTATTGGTCAACCCAATAAAAAGGCATTTAACAGGTCCAATGAAGCTGTATTATTAGAGATTCAAAACACTTTGAAAATTGCTTGTGAAACGCATGGCTTGCCCTTGGCACAAACTTGGGCATCGTGTATCCAACAAAGTAAAGAGGGTTGCAGGCATTCGGATGAGAACTATAGTTGTTGCGTTTCTACGGTAGACCAGGCTTGCTTTGTGGCTGATCCTCGAATTCAGGAATTTCACGAGGCATGCTCTGAGCACCATTTACTAAGAGGTGAAGGCATTGTTGGGATGGCATTTAAATCAAACGAATCATGTTTCTCAAGTGATATTACATCCTTTTGTAACACGGAATATCCTCTCTCTCACCATGCCAAGTTGTTTGGATTACATGCTGCGGTTGCAATACGCCTTCGTTGCATTTATATCAGTAAAACTGACTTTGTACTGGAGTTCTTCCTGCCTGTCGATTGTAGAGAACCCGAAGAGCAGAGAATGCTGCTCACTTCGTTGTCCACAATCATACAACACTCTTGCAGGAGTCTTCGCCTTGTAACGGATAAGGAGTGTAGGGAGGAAAATATGCAGCAAATTCATTTAGAACGTCATCAGTTAGAAGTGAGTCATCCAACAAATTCATTGCTAGCTTCATCTATTCAAAACATCCAACAATGTAGTGGCCCTGTCTCATTTTCCCAGGTGGGTAAAACAACAGAAGTCTTGAGCTCCTCTGGCTATGAGCATCATGAACTGAATTACGATTTGAATGGAGTTGTAGAGGATGGCGAAGAGTGCACGACTGTCGGTAATGGTAACTTTTCTGATATAGGGATGGGAAGAGTTGGTGAGAGAAGGCGAACCAAGGTCGACAAAACTATCACATTACAAGTTCTTCGGCAATATTTTGCGGGTAGCTTAAAAGATGCTGCCAAGAGCATTGGAGTATGCCCCACCACATTGAAAAGGATATGTCGACAACATGGGATTAAACGTTGGCCTTCTCGCAAAATAAAAAAGGTCGGTCACTCATTGCAGAAACTCCAACTCGTAATTGACTCGGTGGAAGGCGCGTCTGGTGCTTTTCAAATTGGCTCCTTGTATTCTAATTTCCAGGAGTTGGCCTCTCCAAATCTATCAGGTTCAGGTCCACTTTCAAGTGGAAAGATGGGAACTGGCTTGAAAATATCAAGCAATCAGAATGAAGTTGGGATGAGCAACCTCCAAGGTGGAGCATCAAAATCTGCATCCTCTTTGTGCAGCCAGAGCCAGAGCTCGAGTTCGAGCCAATGCTTTTCTAGCCAGAGCCATCAAAATCTTCCGCATTGCAATGAAGCCGGAAGCGAAGATCAAATGGATGGAGAGCTAAAGAGGGTCAAAAGTGAAGTAGATATACATGTATCAATTATGGAAGGATCAAACATTCCAAGATCTCAAAGCTGCAAATCTCTTTGCAAACATCCTGCCACTGAATGTCTAATGCAGTCAGCAAAAGAAAGCGATCGGATAGCGGAAGGAAACGAAGCTCTGAGAGTGAAAGTCAGCTACGGAGAGGAGAAAATCCGGTTTCGAGTGCATAACTGCTGGAGATACGAAGAGTTACTGAATGAAATCGCAAGTCGATTTAATATCGGTGACATAAGTAAATATGATCTGAAGTATTTAGATGATGAATCTGAATGGGTGTTATTAACAAATGATACAGATCTGCAGGAATGTTTTCATATTTACAAATCGTCTCGAGTCCAAACGATAAAACTTTCAATTCAGGTGTCTCGACATTATAAGAGAAACCCTCTTATCAGCAGTGGCTTTTCATGA 2712 42.96 MDDCMFSPATMLEAPADTAMDLDYMDGLLLDCCWLETADGAEFFHPSPSSFGANLDPWVGWNASEMNGDFNTSLITRSNQEEQRKISTDEASLRPERVDVGQEECSGQLENNALVGSELCRRLWTGPGELLGSASSVMERLIRAVGYIKDFVRDKDVLVQVWVPISRGGRNVLITNQLPFSQNSSCTRLAKYRDISVTYEFTADEDSNNSLGLPGRVFSRKVPEWTPDVRFFTSDEYPRVNHAHEHDVRGTIAFPIFEQGSKNCLGVIEVVMVTQQIKYGSELESVCKALEAVKLRSSDVIGQPNKKAFNRSNEAVLLEIQNTLKIACETHGLPLAQTWASCIQQSKEGCRHSDENYSCCVSTVDQACFVADPRIQEFHEACSEHHLLRGEGIVGMAFKSNESCFSSDITSFCNTEYPLSHHAKLFGLHAAVAIRLRCIYISKTDFVLEFFLPVDCREPEEQRMLLTSLSTIIQHSCRSLRLVTDKECREENMQQIHLERHQLEVSHPTNSLLASSIQNIQQCSGPVSFSQVGKTTEVLSSSGYEHHELNYDLNGVVEDGEECTTVGNGNFSDIGMGRVGERRRTKVDKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVEGASGAFQIGSLYSNFQELASPNLSGSGPLSSGKMGTGLKISSNQNEVGMSNLQGGASKSASSLCSQSQSSSSSQCFSSQSHQNLPHCNEAGSEDQMDGELKRVKSEVDIHVSIMEGSNIPRSQSCKSLCKHPATECLMQSAKESDRIAEGNEALRVKVSYGEEKIRFRVHNCWRYEELLNEIASRFNIGDISKYDLKYLDDESEWVLLTNDTDLQECFHIYKSSRVQTIKLSIQVSRHYKRNPLISSGFS 903
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18131605 18136747 - Sed0020896.2 Sed01g2434 701738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2434 903 Pfam RWP-RK domain 591 638 IPR003035 -
Sed01g2434 903 Pfam NLP protein GAF domain 158 293 IPR055081 -
Sed01g2434 903 Pfam NLP protein GAF domain 308 481 IPR055081 -
Sed01g2434 903 MobiDBLite consensus disorder prediction 699 718 - -
Sed01g2434 903 Pfam PB1 domain 807 888 IPR000270 GO:0005515(InterPro)
Sed01g2434 903 SMART PB1_new 806 889 IPR000270 GO:0005515(InterPro)
Sed01g2434 903 PANTHER PROTEIN NLP8 89 890 IPR045012 GO:0003700(InterPro)
Sed01g2434 903 ProSiteProfiles PB1 domain profile. 806 889 IPR053793 -
Sed01g2434 903 SUPERFAMILY CAD & PB1 domains 803 886 - -
Sed01g2434 903 CDD PB1_NLP 807 887 IPR034891 -
Sed01g2434 903 Gene3D - 802 888 - -
Sed01g2434 903 ProSiteProfiles RWP-RK domain profile. 575 658 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2434 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2434 Sed-Chr1:18131605 Sed13g2190 Sed-Chr13:26450993 0.00E+00 dispersed
Sed01g2433 Sed-Chr1:18131605 Sed01g2434 Sed-Chr1:18131605 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g95 Blo01g01637 Blo12g00853 . Bda03g00320 Bpe02g00307 Bpe04g00281 . Bma01g02411 . . Cma01g02014 Cma09g00053 Car01g01583 . . Cpe06g00022 . . . . . . . . . . . . . . . Cone4ag2020 Cone7ag1936 . Cone20ag0023 Lsi04g01806 Csa04g02701 . . Blo17g00903 . Bda11g00974 . . . . . Sed01g2434 Cmo01g02071 Cmo09g00055 . . . Car09g00046 . Cpe02g00035 Bhi09g02885 Tan01g5108 Cmetu07g0208 . . Mch11g0056 . Cla11g01823 Cam11g1889 Cec11g1914 Cco11g1922 Clacu11g2054 Cmu11g1859 Cre11g2265 . . Chy07g00393 Cme07g00054
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003158 2 5 3 1 2 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 4 4 2 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37296 PF00564 PB1 2.20E-17 CL0072 Sed TF