Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2437 ATGGCTGGATCGGATGAGAACAACCCGGGTGTGATCGGACGGGCGAATCCTCACGGGGGTTTGCGTATTGGTGGCGGCGGTGGCGGAAAATTTGTGGTGGGGGCGGGTCAAAACCGCAGAGCTTTGAGCAACATTAATGGCAATGTCACAGCAGCTCCTCCCCTTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAGCAACAAAGACCCTCCGATTCCGGTTCATCGACCGATAACTCGGAAGTTTGCTGCTCAACTTGTCAATAAGCAGCAGCAACCTGTGCCTGAGGTTGATAGAAAGCCACAACAACCCGTCCCAACTCGAAAAGAGTCTTTAGATCTTGATCCCATCTTAGGGGAAGATGATTCCATGGACGATTCGGCAGTACCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGATAGAATGGAGGTGGAAATGGATGATGTAGAAGAAGAGCCTGTTATGGACATAGACAGCCGTGACAGGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGAATTGTATGCTTACTACAGGAAAGCCGAGGTTTCTGGCTGTGCTCAGCCGAACTACATGGCTCAACAAGCTGATCTTAACGAAAGGATGAGAGGGATTCTAATTGACTGGCTAATTGAGGTACACTACAAGTTTGAACTGATGGAGGAGACATTGTACCTAACAGTCAACCTAATCGATAGATTCTTGGCGGTTCATTCGGTTGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACAGCCATGCTTATTGCTTGCAAGTATGAAGAAGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATTTCAGACAAGGCTTACAGCCGACAAGAAGTTCTGGACATGGAGAAGTTGATGGTGAACACATTACAGTTCAATCTGTCTGTTCCAACCCCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCTCAATCTGATAAAGAGCTGGACCTGCTCTCATACTTCATGGTGGAGCTTTGTCTAGTAGAATACGAAATGCTGAAGTATAAGCCTTCGTTAATGGCCGCTGCCGCAGTCTTCACGGCGCAATGTACCATCAACGGCTTTGATGAATGGAGCAAAACCAGCGCGTGGCACACTGGATATTCCCAGAAAGAGCTGTTGGAATGTTCACGCTTGATGGTTCGATTTCACCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCATAGGAAATATTGCACATCCAAGTTTGGATATGCTGCAAGAAGTGTGCCAGCCAGTTTTCTGTTGGAAGAAAGGCTATAG 1317 46.77 MAGSDENNPGVIGRANPHGGLRIGGGGGGKFVVGAGQNRRALSNINGNVTAAPPLHPCAVLKRGLTETDVVVSNKDPPIPVHRPITRKFAAQLVNKQQQPVPEVDRKPQQPVPTRKESLDLDPILGEDDSMDDSAVPMFVQHTEAMLDEIDRMEVEMDDVEEEPVMDIDSRDRKDQLAVVEYIDELYAYYRKAEVSGCAQPNYMAQQADLNERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRQEVLDMEKLMVNTLQFNLSVPTPYVFMRRFLKAAQSDKELDLLSYFMVELCLVEYEMLKYKPSLMAAAAVFTAQCTINGFDEWSKTSAWHTGYSQKELLECSRLMVRFHQKAGTGKLTGVHRKYCTSKFGYAARSVPASFLLEERL 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18169120 18173358 + Sed0000322.1 Sed01g2437 701741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2437 438 MobiDBLite consensus disorder prediction 1 21 - -
Sed01g2437 438 SUPERFAMILY Cyclin-like 312 430 IPR036915 -
Sed01g2437 438 SMART cyclin_7 317 399 IPR013763 -
Sed01g2437 438 SMART cyclin_7 220 304 IPR013763 -
Sed01g2437 438 Pfam Cyclin, C-terminal domain 313 429 IPR004367 -
Sed01g2437 438 SMART Cyclin_C_2 313 430 IPR004367 -
Sed01g2437 438 CDD CYCLIN_AtCycB-like_rpt2 313 429 - -
Sed01g2437 438 Coils Coil 143 163 - -
Sed01g2437 438 Pfam Cyclin, N-terminal domain 186 311 IPR006671 -
Sed01g2437 438 PANTHER CYCLINS 163 417 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed01g2437 438 MobiDBLite consensus disorder prediction 95 124 - -
Sed01g2437 438 Gene3D - 186 424 - -
Sed01g2437 438 Gene3D - 199 311 - -
Sed01g2437 438 FunFam G2/mitotic-specific cyclin-1 301 425 - -
Sed01g2437 438 CDD CYCLIN_AtCycB-like_rpt1 164 308 - -
Sed01g2437 438 ProSitePatterns Cyclins signature. 215 246 IPR048258 -
Sed01g2437 438 SUPERFAMILY Cyclin-like 175 310 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2437 Sed-Chr1:18169120 Sed10g1066 Sed-Chr10:9737830 1.90E-119 dispersed
Sed01g2437 Sed-Chr1:18169120 Sed14g1250 Sed-Chr14:21622118 2.20E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2437 K21777 - csv:101223199 724.546