Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2437 | ATGGCTGGATCGGATGAGAACAACCCGGGTGTGATCGGACGGGCGAATCCTCACGGGGGTTTGCGTATTGGTGGCGGCGGTGGCGGAAAATTTGTGGTGGGGGCGGGTCAAAACCGCAGAGCTTTGAGCAACATTAATGGCAATGTCACAGCAGCTCCTCCCCTTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACAGAAACTGATGTTGTTGTCAGCAACAAAGACCCTCCGATTCCGGTTCATCGACCGATAACTCGGAAGTTTGCTGCTCAACTTGTCAATAAGCAGCAGCAACCTGTGCCTGAGGTTGATAGAAAGCCACAACAACCCGTCCCAACTCGAAAAGAGTCTTTAGATCTTGATCCCATCTTAGGGGAAGATGATTCCATGGACGATTCGGCAGTACCGATGTTTGTTCAACACACAGAAGCAATGTTGGACGAAATTGATAGAATGGAGGTGGAAATGGATGATGTAGAAGAAGAGCCTGTTATGGACATAGACAGCCGTGACAGGAAGGATCAACTAGCTGTTGTGGAGTACATTGATGAATTGTATGCTTACTACAGGAAAGCCGAGGTTTCTGGCTGTGCTCAGCCGAACTACATGGCTCAACAAGCTGATCTTAACGAAAGGATGAGAGGGATTCTAATTGACTGGCTAATTGAGGTACACTACAAGTTTGAACTGATGGAGGAGACATTGTACCTAACAGTCAACCTAATCGATAGATTCTTGGCGGTTCATTCGGTTGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACAGCCATGCTTATTGCTTGCAAGTATGAAGAAGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATTTCAGACAAGGCTTACAGCCGACAAGAAGTTCTGGACATGGAGAAGTTGATGGTGAACACATTACAGTTCAATCTGTCTGTTCCAACCCCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCTCAATCTGATAAAGAGCTGGACCTGCTCTCATACTTCATGGTGGAGCTTTGTCTAGTAGAATACGAAATGCTGAAGTATAAGCCTTCGTTAATGGCCGCTGCCGCAGTCTTCACGGCGCAATGTACCATCAACGGCTTTGATGAATGGAGCAAAACCAGCGCGTGGCACACTGGATATTCCCAGAAAGAGCTGTTGGAATGTTCACGCTTGATGGTTCGATTTCACCAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCATAGGAAATATTGCACATCCAAGTTTGGATATGCTGCAAGAAGTGTGCCAGCCAGTTTTCTGTTGGAAGAAAGGCTATAG | 1317 | 46.77 | MAGSDENNPGVIGRANPHGGLRIGGGGGGKFVVGAGQNRRALSNINGNVTAAPPLHPCAVLKRGLTETDVVVSNKDPPIPVHRPITRKFAAQLVNKQQQPVPEVDRKPQQPVPTRKESLDLDPILGEDDSMDDSAVPMFVQHTEAMLDEIDRMEVEMDDVEEEPVMDIDSRDRKDQLAVVEYIDELYAYYRKAEVSGCAQPNYMAQQADLNERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYSRQEVLDMEKLMVNTLQFNLSVPTPYVFMRRFLKAAQSDKELDLLSYFMVELCLVEYEMLKYKPSLMAAAAVFTAQCTINGFDEWSKTSAWHTGYSQKELLECSRLMVRFHQKAGTGKLTGVHRKYCTSKFGYAARSVPASFLLEERL | 438 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18169120 | 18173358 | + | Sed0000322.1 | Sed01g2437 | 701741 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2437 | 438 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Sed01g2437 | 438 | SUPERFAMILY | Cyclin-like | 312 | 430 | IPR036915 | - | |
Sed01g2437 | 438 | SMART | cyclin_7 | 317 | 399 | IPR013763 | - | |
Sed01g2437 | 438 | SMART | cyclin_7 | 220 | 304 | IPR013763 | - | |
Sed01g2437 | 438 | Pfam | Cyclin, C-terminal domain | 313 | 429 | IPR004367 | - | |
Sed01g2437 | 438 | SMART | Cyclin_C_2 | 313 | 430 | IPR004367 | - | |
Sed01g2437 | 438 | CDD | CYCLIN_AtCycB-like_rpt2 | 313 | 429 | - | - | |
Sed01g2437 | 438 | Coils | Coil | 143 | 163 | - | - | |
Sed01g2437 | 438 | Pfam | Cyclin, N-terminal domain | 186 | 311 | IPR006671 | - | |
Sed01g2437 | 438 | PANTHER | CYCLINS | 163 | 417 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed01g2437 | 438 | MobiDBLite | consensus disorder prediction | 95 | 124 | - | - | |
Sed01g2437 | 438 | Gene3D | - | 186 | 424 | - | - | |
Sed01g2437 | 438 | Gene3D | - | 199 | 311 | - | - | |
Sed01g2437 | 438 | FunFam | G2/mitotic-specific cyclin-1 | 301 | 425 | - | - | |
Sed01g2437 | 438 | CDD | CYCLIN_AtCycB-like_rpt1 | 164 | 308 | - | - | |
Sed01g2437 | 438 | ProSitePatterns | Cyclins signature. | 215 | 246 | IPR048258 | - | |
Sed01g2437 | 438 | SUPERFAMILY | Cyclin-like | 175 | 310 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2437 | Sed-Chr1:18169120 | Sed10g1066 | Sed-Chr10:9737830 | 1.90E-119 | dispersed | |
Sed01g2437 | Sed-Chr1:18169120 | Sed14g1250 | Sed-Chr14:21622118 | 2.20E-120 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2437 | K21777 | - | csv:101223199 | 724.546 |