Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2438 ATGGTTTCATTGTTTGGTTGTAAACCAGTTCAACACCAGCGTCACAGGTTCGAACCCGAGAATCGGTACTTAAATAAATCGTTCAGAACTAAATCGAAGAAAATCAAGTCAATACTTCCAAATCCCTTTATGTGGAAAATTGAAAAGACAAAAAAACAGAGATATATCCCTCGTATTGATATCATCAATTTCTCAATCAAGCCGTCCATGTCGCAAATTAAATTTAAGCCTACTTCTTCAGATTTTCTTATAACATGTTTCTTACCAGTTGGGGAATATTGTTGTGGTGTGAGGATGGATAAGAAGGAGAAAAATTCCCTCACAGTGGCACCTTTCGAGTGTGCTTGGCTTAAGGATTTAAGATTTCGAGAAGCAGGACGGGGTTGTGTGGCTTTTGAAGCTTCTGCTCATAACGATGTTACGTTGGTGTTTCGAGAGAATGTGGGGAGTCAACATTACCATTACAAACGAGATAGCTGTCCTCATTACACTGTTATATTAGGTAGTCACCGAAATCGACGTCTAAGGATTATAGCCGATGGGAGGACCGTTGTTGATGTAGAGGGTGTTGCTCTTTGCAGTTCTACAGCGTTTCAGAGCTATTGGATCAGTATCTATGATGGTTTGATCAGCATTGGGAAGGGGAGATACCCTTTTCAAAATCTGGTTTTTCAGTGGCTTGATACAAATCCTAATTGTAGTGTTCAATATATTGGGCTTAGTAGCTGGGATAAACATGTGGGATACAGAAATGTTAATGTTTTGCCACCGACTCAGGACCATATTTCCTTGTGGAAGCATGTGGATAATGGTGACGAAGGCGAGGAAGATGTGGAAATGGAGTTAGAAGATGAATACACAGATTACAAAAACTGGGGCCTCGAACATTTTCTAGAGAATTGGGATTTATCAGATGTGCTTTTCAGTGTAGATTCTGGTGAAACACTCGTACCTGCTCATAAGGCTATCTTAGCTGCTTCGGGCAACTTCCCCTTAAATTTGTCGCAGGATGTCGTAGAGCTACATGGAGAAACATATGTAATTCTCCATGCTCTTCTTCAATATATCTACACGGGTCAAACTGAGATTCTAGAGTCTCAACTTGGTTCCTTGAGGGATCTAGCCTTACAATTTGAAGTGATAGCATTAGTGAACCAGTGTGTTGACATGATGGAACGATTAAAACTGAACAAAAAGCTTTCCGACTCAAGTAAGAGCGTGGAAATATCATATCCAAGGATTCAGCCACGTTGTAGTACAGTCTTCCCCTCCGGGCTTCCATTAAATGTGCAGAAGCTTAATCAATTACAATGTACTGGCGAGTTCAGTGATGTATGTCTCTATATACAAGGCCATGGGTTTGTTGCCCAGGTGCACAAAATCATTCTTAGCTTATGGAGCATGCCTTTTGAAAGGATGTTCACCAATGGAATGAGTGAAACGTCATCCTCTGAGGTTTATATTAGGGATGTGTCGCCGGAAGCTTTTCAAACCATGCTGAAGTTCATGTATAGTGGAGAACTGTGTAAATATGATACAATGGAATCTGACGTCTTATTACTTCAACTACTATTTTTAGCTGATCAATTTGGTGTCACTCTTCTCCATCAAGAATGCTGCAAAATACTTCTAGAATGTCTTTCGGAGGATTCAGTATGCTCCATCCTTCAAGTTGTTTCTTCAATTCCATGCTGTAAGCTCATTGAAGAAACTTGTGAGAGGAAGTTTTCAATGCACTTTGACTATTGTACAACTGCAAACATCGAATTTGTCATATTAGACAAGTCAACCTTCCGCAAAATCCTTCAGTGTCCTGATTTGACTGTGACGTCTGAGGAAAAAGTACTCAATGCAATCTTAATGTGGGGTTTAGAAGCAAGTGAATCATGTGGGTGGATGGCGGTAGATGAACTTCTGACATTTTCAAACCCTGATATCCTTTTTGGGGAGAGACTTCAATCAGTTCAGGATTTGCTTTCTCTTGTGCGATTCCCATTACTTCCATATGCCTTGTTGGAGAAGTTGGAGAACAGCAGCATTAGCAGGAAAATTCACACCTTTAAGAATCTTGTGAAGGAGGCTATCGAGTTTGTGAAAGTTAAATCTACATCTAGGCCAGAGTACAAGAAAAAGAACAATGTGAGGTTTCAACATAGACGGTCTAGTTATAAGGAGCTACAGTACATCTGCGATGGGGATAGCAATGGAGTTCTATACTTTGCTGGTACCTCATATGGAGAACACCAGTGGGTTAATCCCATTCTTTCGAAGAAAATTACTATTACAGCAAGCAGTCCACCTTCAAGGTACACAGATCCAAAGGTTCTGGTATCGAGAACTTACCAGGGAACTTCCTTTGCCGGCCCTCGCCTGGAAGACGGGCAAACTTATTCATGGTGGATGGTTGATATTGGTGAAGATCATCAGGTTTTTTCTCTATTTTTTGTAGAATTGTATAAAATGTGTTAA 2469 40.42 MVSLFGCKPVQHQRHRFEPENRYLNKSFRTKSKKIKSILPNPFMWKIEKTKKQRYIPRIDIINFSIKPSMSQIKFKPTSSDFLITCFLPVGEYCCGVRMDKKEKNSLTVAPFECAWLKDLRFREAGRGCVAFEASAHNDVTLVFRENVGSQHYHYKRDSCPHYTVILGSHRNRRLRIIADGRTVVDVEGVALCSSTAFQSYWISIYDGLISIGKGRYPFQNLVFQWLDTNPNCSVQYIGLSSWDKHVGYRNVNVLPPTQDHISLWKHVDNGDEGEEDVEMELEDEYTDYKNWGLEHFLENWDLSDVLFSVDSGETLVPAHKAILAASGNFPLNLSQDVVELHGETYVILHALLQYIYTGQTEILESQLGSLRDLALQFEVIALVNQCVDMMERLKLNKKLSDSSKSVEISYPRIQPRCSTVFPSGLPLNVQKLNQLQCTGEFSDVCLYIQGHGFVAQVHKIILSLWSMPFERMFTNGMSETSSSEVYIRDVSPEAFQTMLKFMYSGELCKYDTMESDVLLLQLLFLADQFGVTLLHQECCKILLECLSEDSVCSILQVVSSIPCCKLIEETCERKFSMHFDYCTTANIEFVILDKSTFRKILQCPDLTVTSEEKVLNAILMWGLEASESCGWMAVDELLTFSNPDILFGERLQSVQDLLSLVRFPLLPYALLEKLENSSISRKIHTFKNLVKEAIEFVKVKSTSRPEYKKKNNVRFQHRRSSYKELQYICDGDSNGVLYFAGTSYGEHQWVNPILSKKITITASSPPSRYTDPKVLVSRTYQGTSFAGPRLEDGQTYSWWMVDIGEDHQVFSLFFVELYKMC 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18174194 18182275 + Sed0015221.1 Sed01g2438 701742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2438 822 SUPERFAMILY POZ domain 293 392 IPR011333 -
Sed01g2438 822 Pfam BTB And C-terminal Kelch 559 625 IPR011705 -
Sed01g2438 822 ProSiteProfiles BTB domain profile. 304 365 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 ProSiteProfiles BTB domain profile. 443 508 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 Gene3D - 579 698 - -
Sed01g2438 822 SMART BACK_2 553 676 IPR011705 -
Sed01g2438 822 SMART BTB_4 443 547 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 SMART BTB_4 304 395 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 Pfam Farnesoic acid 0-methyl transferase 150 247 IPR022041 -
Sed01g2438 822 SUPERFAMILY POZ domain 429 544 IPR011333 -
Sed01g2438 822 Gene3D Potassium Channel Kv1.1; Chain A 417 578 IPR011333 -
Sed01g2438 822 CDD BTB_POZ_ZBTB_KLHL-like 442 509 - -
Sed01g2438 822 Pfam BTB/POZ domain 433 545 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 Pfam BTB/POZ domain 295 392 IPR000210 GO:0005515(InterPro)
Sed01g2438 822 PANTHER OS05G0345500 PROTEIN 99 812 - -
Sed01g2438 822 Gene3D Potassium Channel Kv1.1; Chain A 292 415 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2438 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g100 Blo01g01634 Blo12g00855 . Bda03g00318 Bpe02g00311 Bpe04g00279 Bma04g00286 . . . . Cma09g00057 . . . Cpe06g00025 . . . . . . . . . . . . . . . Cone4ag2017 Cone7ag1933 . . Lsi04g01803 Csa04g02697 . . . . . . . . . . Sed01g2438 . Cmo09g00058 . . . Car09g00049 . . Bhi09g02894 Tan01g5102 Cmetu07g0710 . Hepe01g2337 Mch11g0535 . Cla11g01820 Cam11g1886 Cec11g1911 Cco11g1918 Clacu11g2050 Cmu11g1855 Cre11g2260 . . Chy07g00388 Cme07g00059
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008391 1 2 2 1 1 0 1 1 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 0 1 2 1 30