Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2452 ATGGCAGACCATTCAAATGAAGGTTCCAGCACGAGCAGTCTTTCCGGGGATACTTCAACTTCGAATGTTGAGCTGAATGTCAAGACTTTAGATTCACATGTCTACAGTTTTCAAGTGAATAAAGATCAACGTTTGATATTCAGGGGAAAGGTCTTAAGGGATGAACATGCTCTTTCTGTGTGTCATTTGGAAAATGGACATACCTTGCATTTAGTTGAAAGACAACCAACTCAGCAATATGCAACATTCGACACTGGCGCAGGTGACAGACCTGCAAATGATATGCCAACTAGAATACGAATGCCTTCATCAACCGGTTACGAAGCTGGAGCTGGTGTACCTCAAAATCATGCAGGACAAATTGCACATAGTATGGTTTTAGGAACATTAAATGTTGGGGATCAAGGTGAAGGCATTGTTCCTGATCTTTCTCAGGTTATTGGTGCAGTTCTGAACTCCTTTGGACTAAGCAACCAAAATACAAGCATCTCAAATGGTATGCAAACTTCATTGCCTAACAATCAAGGCACTGCAAGCCAAGGTAATGAAACATTTAGAGGTAATATTGGGGCTGGTGAACAAGCAACGAACCAGGCACAAATTGGACAGGCATTTCCCAGTCAGCCATCACTAAATTTTCCTCATGTGATTCAAAGTCCACTTGCCAGTGCTGTTGTACCAGTTCCTTCCATTCATGCGGTGCCATACTTTTTCTCCTATCCCGATTCTTTGACAACACTTTCTGAGTTCATGAACCGTATGGAGTATGCAATATCTCAGAATGGTGGTGATTTACCCAGGGTGGAACTGCCTACTAATCCCCAAGGTTCGCCAACCACTGAATCTTTGAGCATTGTATTGCGCCATGCTCAGCACCTTCTACATGATTATGCCACAGCTTCACTATCTAATGTTGCTCGGCGTTTGGAGCAAGATAGCTTTTCCCTTGATCCTTCTGTAAGGGATCAAATTCAGGAAGAGTCGGTACAAGTAGGACTTAGAATGCAACAATTTGGAGCGCTTCTTCTAGAACTTGGCCGTACAATGTTGACACTCCGTATGGGACAGTCATCTGCCGAGTTGGTTGTTAATGCTGGCCCATCAGTGTATATCTCTCCTATGGGGCCAAATCCTTTAATGGTTCAGCCTTTTCCCCTTCAAACTAATCCCCTCCTGGGTGGTGCTGCTCTACCATCAAATCCAGTTGGTGCAGTTGGTATTGGAACTGCTTCTAGACACCTTAACATTCATATACCTGCTGTTGGTACCAGGCCGAACAATGGGGCCGCACCTGCAGAGCGTCAGAGTGTCGGTGGCTCAACTGATTCAGGTGGAGCACATGCACCTCCTTTGAGAACTGTTCTTGAGTCTGCCATTCCACATCCGCTGGGCATTTCAATTTCTGCAGCTGTGCAACCTGGTGAAGGTGTTTCTTTTTCCCAGCCTTCTGACTCTGTTTCATTATCCAACATTATTCATAATTACATCACATTATTTTCACTTATACTGAACGTCTTGTATTCAGGTCAAGCGGAAACGGCAGGTCAGAATTCTTCTACTGTTTCTGGAGCAGGTAGTGAACAGAAAAGTCATATGAAACGGGACATCAGTGGAGAGTCAAGTGAGTCATTACCTCGGTGCAACCCTGAAATTGGAAGTGACAAGAATTTAAACGCAGACAATATTTGTCGGGATTCAGGAAGTTCTGTAAATTCAACTGATTTACCAACATACTCTAGTGGTAGGGGCTCTGAATTTGCTGGAACAAATGAAGAAAATTCTCAGAAGGCATCGTGTGAGAAGAGCTCGGGAGCTGGGCCTTCTCAAGCTATTCCACTTGGACTTGGACTGCTGGGAGGTTTGGAACGACCGAGGCGAGGCAGGCAGCAAAGTTCACAGGCTAAGGGGGGCAACAGTGGAACCAGCCACAGCCAAGGTCCTACAGGCCAGCAGATTTTACAATCTCTTGCCTCTAGTGCTTCTATGGATAGGTCAAATGCTCATGAGCCCACCTCGAGCCTACAATCGACTACTAACCCTTATCCGGAAAGCATATCCTCCTTGCATGGGCCAGGTTCTGACAGCCAAATTGGTATAGGAAGCAGTATATCTCAAGTTTTACGGAGTCCTGCTTTGAATGGACTCTTGACAGGGCTTTCGGGGGAAACGGGTGCTGGTTCTTCTGATGTCTTGAGGAACATGTTGCAACAGCTCACGCAGAGCCCTCAGATGAGAAACACAGTCAATCAAATTGCTCAGCAGGTTGACACTCGAGATATCGAACACATTTTTTCCGGGTCGGGAAGAGGCCAGGGCGGTGGTATCGATTTATCCATGATGTTACAGCAGATGATGCCTATTGTCTCTCAAGTGCTTGGAGGATGGCCAAGGCAGCCATCTTCCTCAAATCCAAGGTCTGGTAGTGGAGTGGAAACATCTAATGATCAAAATGTTCAGATTGACTCTCAAGTTCTTGCTCGAAGGATCACATCTACCAATTCTCCAAGGGATGTCTTTCGAGCTGTAGTCGAGAGTTCAGCTCGGCTTTCTGGTATTAGCTGTGAAGATATCACAAGTGAGTTGTGCAGCGATGAGAGACTTGCTAAGGAATATGTAGAGATGTTATCTAGTGATGTAAACCAACGGCTACAGGGCAATTCAGATACGGAAAAATAG 2676 45.37 MADHSNEGSSTSSLSGDTSTSNVELNVKTLDSHVYSFQVNKDQRLIFRGKVLRDEHALSVCHLENGHTLHLVERQPTQQYATFDTGAGDRPANDMPTRIRMPSSTGYEAGAGVPQNHAGQIAHSMVLGTLNVGDQGEGIVPDLSQVIGAVLNSFGLSNQNTSISNGMQTSLPNNQGTASQGNETFRGNIGAGEQATNQAQIGQAFPSQPSLNFPHVIQSPLASAVVPVPSIHAVPYFFSYPDSLTTLSEFMNRMEYAISQNGGDLPRVELPTNPQGSPTTESLSIVLRHAQHLLHDYATASLSNVARRLEQDSFSLDPSVRDQIQEESVQVGLRMQQFGALLLELGRTMLTLRMGQSSAELVVNAGPSVYISPMGPNPLMVQPFPLQTNPLLGGAALPSNPVGAVGIGTASRHLNIHIPAVGTRPNNGAAPAERQSVGGSTDSGGAHAPPLRTVLESAIPHPLGISISAAVQPGEGVSFSQPSDSVSLSNIIHNYITLFSLILNVLYSGQAETAGQNSSTVSGAGSEQKSHMKRDISGESSESLPRCNPEIGSDKNLNADNICRDSGSSVNSTDLPTYSSGRGSEFAGTNEENSQKASCEKSSGAGPSQAIPLGLGLLGGLERPRRGRQQSSQAKGGNSGTSHSQGPTGQQILQSLASSASMDRSNAHEPTSSLQSTTNPYPESISSLHGPGSDSQIGIGSSISQVLRSPALNGLLTGLSGETGAGSSDVLRNMLQQLTQSPQMRNTVNQIAQQVDTRDIEHIFSGSGRGQGGGIDLSMMLQQMMPIVSQVLGGWPRQPSSSNPRSGSGVETSNDQNVQIDSQVLARRITSTNSPRDVFRAVVESSARLSGISCEDITSELCSDERLAKEYVEMLSSDVNQRLQGNSDTEK 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18282403 18293232 + Sed0000145.1 Sed01g2452 701756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2452 891 MobiDBLite consensus disorder prediction 792 821 - -
Sed01g2452 891 MobiDBLite consensus disorder prediction 626 699 - -
Sed01g2452 891 Pfam Ubiquitin family 41 75 IPR000626 GO:0005515(InterPro)
Sed01g2452 891 MobiDBLite consensus disorder prediction 559 605 - -
Sed01g2452 891 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 2 886 - GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0051787(PANTHER)|GO:0071818(PANTHER)
Sed01g2452 891 ProSiteProfiles Ubiquitin domain profile. 42 78 IPR000626 GO:0005515(InterPro)
Sed01g2452 891 MobiDBLite consensus disorder prediction 420 449 - -
Sed01g2452 891 MobiDBLite consensus disorder prediction 1 20 - -
Sed01g2452 891 MobiDBLite consensus disorder prediction 794 821 - -
Sed01g2452 891 SUPERFAMILY Ubiquitin-like 11 80 IPR029071 -
Sed01g2452 891 Gene3D - 7 80 - -
Sed01g2452 891 CDD Ubl_ubiquitin_like 25 72 - -
Sed01g2452 891 MobiDBLite consensus disorder prediction 513 527 - -
Sed01g2452 891 MobiDBLite consensus disorder prediction 513 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2452 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2452 Sed-Chr1:18282403 Sed13g2177 Sed-Chr13:26357481 0.00E+00 dispersed
Sed01g2452 Sed-Chr1:18282403 Sed01g2453 Sed-Chr1:18295515 5.80E-19 tandem
Sed01g2452 Sed-Chr1:18282403 Sed13g2176 Sed-Chr13:26352216 4.60E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2452 . . . . . . . . Bhi09g02931 Tan01g5081 Cmetu07g1738 . . Mch11g0072 . . . . . . . . . . . Cme07g00072
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007185 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36