Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2458 ATGGAAGAAACCCCGCCAACGGAAACCGGAAGATCACCGCCACCACCGCCGATCGAAGAACCAGATCCGAAGAAGCTCAAAATTTCATCCACAACCACCACCTCCGGCGAAGAAGTTACCAATTCCAATCCCGCGGCACCGAAGAAAGAAAGGTACAAGCGCCGCAAGATCGCCATTTTCTTTGCCTACTGCGGCGTCGGTTACCAAGGGATGCAGAAGAATCCAGGCGCCAAAACCATCGAAGCCGACCTCGAAGAAGCCCTCTATCTCGCCGGAGCAGTACCGGAGCACGCCCGAGGGACCTCGGAGGGCTACGATTGGTCCCGCTCTGCTCGCACCGATAAGGGCGTGAGCGCCGTCGGCCAGGTTGTTTCCGGCCGCTTCTACATCGATCCACCGGGTTTTGTCGATCGTCTCAATTCCAATCTCTCGCCTCAGATACGAGTTTTCGGCTATAAGCGCGTAACCGCGTCGTTTAATGCGAAAAAGTTCTGCGATCGGAGAAGGTACGTATACCTACTTCCTGTATTTTCTCTTGATCCTGATTGCCATCGTGATGGAGTAAGTCTAAAGGCTAGTTTAGGGTCTGATAACAAGCTTGTTGAGTGCTTAGAGTGCTCTGGACGAGGACGAAAGGTTGAAGGCTCGATTAAAACTGCGGTAACTCATTCAGACATTTCGTCGAACACGAGAGATGCTATTGAAGTTTCTGAAATTCAGGAAAATGGGGTCTTGGGGGACACGGCCACAACCTCTGATTCTAACCAAACTAGTGTTTTAGTCGAAAATAGTGAAACTGAGCTCAATGCTGGAAGTGAATGTACTGCAAAAAGTGAAATGTCTGGATTAGGGAATGATTCAGAGATTGTTGTAAGCAAAGAGAGTGTTAATGGCAACGAGAATCCTTCGGGGAGCTTTAAATATGGCGAGGAGGTGAAGGCTAGGTTCAATAGGATTTTGAGGAACTATGAAGGAACTCATAACTTCCATAACTTCACTACCAGAATGAAACCAGAGGACCCTGCCGCTTATCGATTCATCGTTGCTTTCGATGCTGCTACCACCGTCGTGGTTGATGGCATTGAATTTGTGAAATGTGAAGTTGTTGGGCAGAGCTTCATGCTTCATCAAATCCGGAAGATGATGGGTCTTGCAGTGGCAATCATGAGGAACTGTGCTCCTGAATCATTGATCAAAAAGGCTTTGCGAAAGGATGTAAATTTCAATGTTCCCACTGCACCTGAGGTTGGGCTGTACTTAGAGGAGTGTCTATTCACATCATATAATCAGAAGTGGAAAGACAGCCATGAAGAGGTATCAATGAAAGCATACGAAGAAGCAGCAGAAGATTTCAAAATGAAGCAAATATATTCTCATATTGCTTCCACAGAGCACAAAGAGGGAGCTGTTGCCTCATGGCTGCATTCTCTAAACCATCGCAATTATTCAGATTTAAATGCTGTCGATGAAGTTGCAGATAATGCTAAGAACACAAGTGTTGACATGGAGATACCAGCTGAAGCTTAA 1527 46.89 MEETPPTETGRSPPPPPIEEPDPKKLKISSTTTTSGEEVTNSNPAAPKKERYKRRKIAIFFAYCGVGYQGMQKNPGAKTIEADLEEALYLAGAVPEHARGTSEGYDWSRSARTDKGVSAVGQVVSGRFYIDPPGFVDRLNSNLSPQIRVFGYKRVTASFNAKKFCDRRRYVYLLPVFSLDPDCHRDGVSLKASLGSDNKLVECLECSGRGRKVEGSIKTAVTHSDISSNTRDAIEVSEIQENGVLGDTATTSDSNQTSVLVENSETELNAGSECTAKSEMSGLGNDSEIVVSKESVNGNENPSGSFKYGEEVKARFNRILRNYEGTHNFHNFTTRMKPEDPAAYRFIVAFDAATTVVVDGIEFVKCEVVGQSFMLHQIRKMMGLAVAIMRNCAPESLIKKALRKDVNFNVPTAPEVGLYLEECLFTSYNQKWKDSHEEVSMKAYEEAAEDFKMKQIYSHIASTEHKEGAVASWLHSLNHRNYSDLNAVDEVADNAKNTSVDMEIPAEA 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18324727 18327299 + Sed0015523.3 Sed01g2458 701762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2458 508 CDD PseudoU_synth_PUS1_PUS2 59 425 IPR041708 GO:0009982(InterPro)|GO:0031119(InterPro)
Sed01g2458 508 SUPERFAMILY Pseudouridine synthase 53 435 IPR020103 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed01g2458 508 FunFam tRNA pseudouridine synthase 287 487 - -
Sed01g2458 508 Pfam tRNA pseudouridine synthase 321 425 IPR020097 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed01g2458 508 MobiDBLite consensus disorder prediction 1 48 - -
Sed01g2458 508 PANTHER PSEUDOURIDYLATE SYNTHASE 41 486 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0005634(PANTHER)|GO:0009451(InterPro)|GO:0009982(PANTHER)|GO:0009982(InterPro)|GO:0031119(PANTHER)|GO:1990481(PANTHER)
Sed01g2458 508 MobiDBLite consensus disorder prediction 27 42 - -
Sed01g2458 508 NCBIfam tRNA pseudouridine(38-40) synthase TruA 55 419 IPR001406 GO:0001522(InterPro)|GO:0003723(InterPro)|GO:0009451(InterPro)|GO:0009982(InterPro)
Sed01g2458 508 Gene3D - 46 165 IPR020094 GO:0003723(InterPro)|GO:0009982(InterPro)
Sed01g2458 508 Gene3D - 287 489 IPR020095 GO:0003723(InterPro)|GO:0009982(InterPro)
Sed01g2458 508 FunFam tRNA pseudouridine synthase 46 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2458 K06173 - - csv:101219581 805.053
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2456 Sed-Chr1:18324727 Sed01g2458 Sed-Chr1:18324727 1.10E-269 dispersed
Sed01g2458 Sed-Chr1:18324727 Sed13g2169 Sed-Chr13:26263386 5.10E-214 dispersed
Sed01g2457 Sed-Chr1:18324727 Sed01g2458 Sed-Chr1:18324727 8.20E-208 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g144 . Blo12g00869 . Bda03g00305 . Bpe04g00267 Bma04g00269 . . . . Cma09g00077 . . . Cpe06g00041 . . . . . . . . . . . . . . . . Cone7ag1918 . . Lsi04g01786 Csa04g02676 . . . . . . . . . . Sed01g2458 . Cmo09g00076 . . . Car09g00067 . . Bhi09g02939 Tan01g5065 Cmetu07g1422 . Hepe01g2313 Mch11g0079 . Cla05g01587 Cam05g1696 Cec05g1697 Cco05g1748 Clacu05g1683 Cmu05g1573 Cre05g1690 . . . Cme07g00081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008390 1 1 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 35