Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2459 ATGTCGCCGCCGGCCAGGACCAAAACCTGGACCGGCGCCGGAGACAAGCACTACCCGCCGGCGCTGTCCACCCACGACACAGTCTCCTCCGACCCGACCGTTTTCTGGGACACCTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATACAGAGGTTACAAGAAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTATTCAAGTTTTCTCCTACAACGACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACATGTTCGGCCGGCAGGGCCCCATCTGTTTCCCTCAAGTGCCATTTGCTTTTGGTAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACGCCGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTTACTGGTACTATTGATGGGAAATTCGACTGTGGTTATCTGGTGTCTGTGAAATTGGGATCTGAGGTTCTGAGAGGAGTACTTTACCATCCCGAACAGCCAGCTCCATCTGATCTACGGCCCCAGTCTTCTAATGCCATTGTCCCTTACACCGGAGGCAGACATCAGCATTCCGGTCGGCGTAACCGGAGGAGTCGGAGAAAGGGAGACCCGAACCACCCTAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAAACTCAGCCCTGAAGAAAGGGTGGTTTATCAAAACATTGGGCTCAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAAGAGAAATTGAGGTTGGGAACTGATATTCATGCAGCTAATTATTCAAAACATGGAGAGTAG 975 47.49 MSPPARTKTWTGAGDKHYPPALSTHDTVSSDPTVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYTEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYMFGRQGPICFPQVPFAFGSPTSENELALVEYTPKTPSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEQPAPSDLRPQSSNAIVPYTGGRHQHSGRRNRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERVVYQNIGLKDKERYKRELKEYKEKLRLGTDIHAANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18337435 18340210 + Sed0018827.1 Sed01g2459 701763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2459 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Sed01g2459 324 MobiDBLite consensus disorder prediction 196 244 - -
Sed01g2459 324 SUPERFAMILY ARID-like 28 127 IPR036431 GO:0003677(InterPro)
Sed01g2459 324 SMART ARID_2 26 116 - -
Sed01g2459 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Sed01g2459 324 Coils Coil 294 314 - -
Sed01g2459 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 316 - -
Sed01g2459 324 SMART hmgende2 237 306 IPR009071 -
Sed01g2459 324 MobiDBLite consensus disorder prediction 201 215 - -
Sed01g2459 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Sed01g2459 324 MobiDBLite consensus disorder prediction 220 235 - -
Sed01g2459 324 Gene3D - 22 126 IPR036431 GO:0003677(InterPro)
Sed01g2459 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 Pfam HMG-box domain 235 304 IPR009071 -
Sed01g2459 324 Gene3D High mobility group box domain 222 313 IPR036910 -
Sed01g2459 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 SUPERFAMILY HMG-box 235 307 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2459 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2459 Sed-Chr1:18337435 Sed04g2060 Sed-Chr4:35005891 3.00E-66 dispersed
Sed01g2459 Sed-Chr1:18337435 Sed09g0187 Sed-Chr9:1478192 1.70E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37297 PF01388 ARID 2.10E-18 CL0123 Sed TR