Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2459 ATGTCGCCGCCGGCCAGGACCAAAACCTGGACCGGCGCCGGAGACAAGCACTACCCGCCGGCGCTGTCCACCCACGACACAGTCTCCTCCGACCCGACCGTTTTCTGGGACACCTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGACTTGCATGTTTTATATACAGAGGTTACAAGAAGGGGCGGCCATGAAAAGGTTGTTGCAGAGAAGAAATGGAGGGAAGTTGGAAGTGTATTCAAGTTTTCTCCTACAACGACAAGTGCTTCATTTGTATTGAGAAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACATGTTCGGCCGGCAGGGCCCCATCTGTTTCCCTCAAGTGCCATTTGCTTTTGGTAGCCCTACGAGTGAAAACGAATTGGCTCTGGTGGAATATACTCCCAAAACGCCGTCGTTTTCGCCTGGTCCTCCTGCTGAAGTTACTGGTACTATTGATGGGAAATTCGACTGTGGTTATCTGGTGTCTGTGAAATTGGGATCTGAGGTTCTGAGAGGAGTACTTTACCATCCCGAACAGCCAGCTCCATCTGATCTACGGCCCCAGTCTTCTAATGCCATTGTCCCTTACACCGGAGGCAGACATCAGCATTCCGGTCGGCGTAACCGGAGGAGTCGGAGAAAGGGAGACCCGAACCACCCTAAACCGAATAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTCTGTACCCAAACAGAGAGAGGGAGTTCACTAAGATGATTGGAGAGTCTTGGAACAAACTCAGCCCTGAAGAAAGGGTGGTTTATCAAAACATTGGGCTCAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAAGAGAAATTGAGGTTGGGAACTGATATTCATGCAGCTAATTATTCAAAACATGGAGAGTAG 975 47.49 MSPPARTKTWTGAGDKHYPPALSTHDTVSSDPTVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYTEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYMFGRQGPICFPQVPFAFGSPTSENELALVEYTPKTPSFSPGPPAEVTGTIDGKFDCGYLVSVKLGSEVLRGVLYHPEQPAPSDLRPQSSNAIVPYTGGRHQHSGRRNRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNKLSPEERVVYQNIGLKDKERYKRELKEYKEKLRLGTDIHAANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18337435 18340210 + Sed0018827.1 Sed01g2459 701763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2459 324 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Sed01g2459 324 MobiDBLite consensus disorder prediction 196 244 - -
Sed01g2459 324 SUPERFAMILY ARID-like 28 127 IPR036431 GO:0003677(InterPro)
Sed01g2459 324 SMART ARID_2 26 116 - -
Sed01g2459 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Sed01g2459 324 Coils Coil 294 314 - -
Sed01g2459 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 316 - -
Sed01g2459 324 SMART hmgende2 237 306 IPR009071 -
Sed01g2459 324 MobiDBLite consensus disorder prediction 201 215 - -
Sed01g2459 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Sed01g2459 324 MobiDBLite consensus disorder prediction 220 235 - -
Sed01g2459 324 Gene3D - 22 126 IPR036431 GO:0003677(InterPro)
Sed01g2459 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 Pfam HMG-box domain 235 304 IPR009071 -
Sed01g2459 324 Gene3D High mobility group box domain 222 313 IPR036910 -
Sed01g2459 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Sed01g2459 324 SUPERFAMILY HMG-box 235 307 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2459 Sed-Chr1:18337435 Sed04g2060 Sed-Chr4:35005891 3.00E-66 dispersed
Sed01g2459 Sed-Chr1:18337435 Sed09g0187 Sed-Chr9:1478192 1.70E-69 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37297 PF01388 ARID 2.10E-18 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2459 - - - 0.0