Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2461 ATGGCTTCGAAGGAAGAAGTATTTCTCAAGATCGACAGCTTCGGAAATGGGGGCGACAAGAAAATCCAGGGTTTACCAGAGAAATCGCCACAAACCATGAGACGAAGAGGCAAAGAGTTTCCAGAGCCGGAAACTCGCCGGCCCGGCGGCGGCGAGGTTCTCCGGTGCAGTTCCTACGCTTCATTTCGTGGAAGCTCATGGAGCTCGCCGATTAGCAAGAGATCTCGGCTGATGGATCCGCCTGAGGAAGATTCTTCTCAAAAGCTTGAAACCGCCGTGAAAGATGAAGGCAACAACAACAACAACGACGACGACAACAACAATCAGGATGATACAGAAGATATGCCTGAAGAATACGATCAACTGAAGCTAAGCCCCTTCTTTATTTTTCAGTTGGTTCTTTCTGTTTTTGTTATTGTGGGTTTGATTTGCAATCGATGGGTTTCGATCTTGAAGAGGGAGACGATTTGGGGTCTTCCGTTGTGGAAATGGGAACTGACTGTTCTAGCTGTGATCTGTGGGCATTTGGTTTCGATTTTGGCCGTTCGATTGATTGTGAAAATCATCGAGATGAATTTTTTGTTGAGGAAACGTGTTCTGTATTTCGTTTATGGGTTAAGGAATTCTGTTCAAATTTGCTTGTGGGTGTCTTTGATTTTGCTTGTTTGGCATTTCATTTTCAACCACAAGGTTCAGATTAAGACTCAGAGTAAGATTTTACCTTATGTTACCAAGATTTTCATCTGTTTTCTCGTGGGTGCTTCGATTTGGCTTCTGAAAACCCTTGCCATTAAAATTCTGGCTTCGTTTTTTCATGTTAATCACTACTTTGAAAGGCTTAAGGAGGCTTTGTTTAGTCAGTTTGTGATTGTGAGTCTCTCTGGTTTGCCATTGTTCAAGCGGCCGAATACTAAAGATGTGATGATGGGAGACCAGAATGCTGATGGAAGAGAAGAAAGTCCCAAAAGTGGGAGAGTTATATGCAGTGGGAGACTTGTAGATTGCAATCGATCGAGACCGTTGAAGCCCGATTCGGTTAAAGAAGATGAGGAAATCCCAGTTGATCAGTTGAATAAAATGAACCAGAAGAATATATCTGCTTGGAATATGAGGAGAATGATGAATATTATAAGAAAGGGAGCTTTGTTAACTCTTGATGAGAAGATATTGTCAGAGACGAATGAAGAATCATTGTTGCAGATTAGGAGTGAACGGCAGGCGAAAGAGGCAGCTGAGAAGATTTTCCAACGAGTTGTTCAACGTGGGTCAGACTGTATTTATCTGGAAGATGTAATGCGATTTATGAACAAAGAGGAAGCTCTAATGACCCTGAGTTTATTTGGAACAACCGCTGAAACCCAATGCATTGATGAGTCCTCTTTTAGAGAGTGGATGGTAAATGCATTTAAGCAGAGAAAAGTTCTTGTATTATCTCTCGGTGATGCAAATACAGCTGTTGATGATCTTCACAGCTTGCTGAACATCTTTGTAGCTATAATAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCGTTCGGCACTTTCTCATCTTCATAACTTCACAGCTTCTACTGCTGGTTTTTATTTTTGGTAACACATGTAAGACAGTCTTCGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTTGACATTGGTGATCGCTGCGAAGTAGACGGTGTCCAGATGATTGTTGAAGAGATGAAGATATTAACAACTGTTTTTCTGAGATATGATAACCAGAAGATCACTTACCCCAACAGTGTGCTGGCTACTAAAGCCATTGGCAATTACTACCGCAGTCCAGACATGGGAGAGGGAGTTGATTTCTATGTCCACATCTCAACTCCATGGGAGAAAGTTGCCCTTTTGAAAGAACGGATAACAAGGTACGTAGAGAGCATGAGCGAGCTATGGCATCCAAATCCACAGATTGTGATGAAGGAAATTGAAGATCTGGAGAAGGTGAAGATGTCAGTTTGTGTTACACACAAAATGAACCACCAAGACATGAAAGAGAGATGGAACAGGAGAGCTGTGCTGGTTGAAGAGATTGTCACAATTTTGGAGTCAACTTGA 2082 41.93 MASKEEVFLKIDSFGNGGDKKIQGLPEKSPQTMRRRGKEFPEPETRRPGGGEVLRCSSYASFRGSSWSSPISKRSRLMDPPEEDSSQKLETAVKDEGNNNNNDDDNNNQDDTEDMPEEYDQLKLSPFFIFQLVLSVFVIVGLICNRWVSILKRETIWGLPLWKWELTVLAVICGHLVSILAVRLIVKIIEMNFLLRKRVLYFVYGLRNSVQICLWVSLILLVWHFIFNHKVQIKTQSKILPYVTKIFICFLVGASIWLLKTLAIKILASFFHVNHYFERLKEALFSQFVIVSLSGLPLFKRPNTKDVMMGDQNADGREESPKSGRVICSGRLVDCNRSRPLKPDSVKEDEEIPVDQLNKMNQKNISAWNMRRMMNIIRKGALLTLDEKILSETNEESLLQIRSERQAKEAAEKIFQRVVQRGSDCIYLEDVMRFMNKEEALMTLSLFGTTAETQCIDESSFREWMVNAFKQRKVLVLSLGDANTAVDDLHSLLNIFVAIIILVIWLIILGTPVRHFLIFITSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDIGDRCEVDGVQMIVEEMKILTTVFLRYDNQKITYPNSVLATKAIGNYYRSPDMGEGVDFYVHISTPWEKVALLKERITRYVESMSELWHPNPQIVMKEIEDLEKVKMSVCVTHKMNHQDMKERWNRRAVLVEEIVTILEST 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18343444 18349838 - Sed0028199.1 Sed01g2461 701765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2461 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 691 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed01g2461 693 Gene3D - 550 599 IPR023408 -
Sed01g2461 693 PIRSF Memb_At2g17000 21 693 IPR016688 -
Sed01g2461 693 MobiDBLite consensus disorder prediction 1 116 - -
Sed01g2461 693 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2461 693 SUPERFAMILY Sm-like ribonucleoproteins 540 599 IPR010920 -
Sed01g2461 693 MobiDBLite consensus disorder prediction 59 73 - -
Sed01g2461 693 MobiDBLite consensus disorder prediction 31 49 - -
Sed01g2461 693 FunFam Predicted mechanosensitive ion channel 550 599 - -
Sed01g2461 693 MobiDBLite consensus disorder prediction 76 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2461 K22048 - - mdm:103410417 741.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2461 Sed-Chr1:18343444 Sed05g2203 Sed-Chr5:34836664 4.90E-159 dispersed
Sed01g2461 Sed-Chr1:18343444 Sed05g3519 Sed-Chr5:43835163 1.10E-179 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g216 . Blo15g00394 Bda06g00468 . Bpe07g00704 . . Bma12g00910 . Cmo11g01757 . . . . Sed01g2461 . . Bhi05g01669 Tan02g0642 Cmetu01g0333 . . . . Cla02g00401 Cam02g0406 Cec02g0406 Cco02g0422 Clacu02g0409 Cmu02g0405 Cre02g0740 Cone12ag1250 . Cone3ag0976 Cone10ag1228 Lsi10g00810 . . Cme01g01219 . . . . Bpe15g00798 . . . . . . Cma11g01360 . . . Cpe16g00335 . . . . . . . . . . . . . . . . . Chy01g00654 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g0157 . 153 541 Mechanosensitive Ion Channel Family AT4G00290 66.8 1.0e-150 531.2
Sed12g0158 . 153 398 Mechanosensitive Ion Channel Family AT4G00290 65.9 8.6e-89 325.5
Sed13g1078 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1077 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed13g1079 . 9 725 Mechanosensitive Ion Channel Family AT5G10490 55.7 1.6e-194 677.2
Sed04g0205 . 15 663 Mechanosensitive Ion Channel Family AT5G10490 58.4 1.1e-192 671.0
Sed03g1409 . 27 706 Mechanosensitive Ion Channel Family AT5G10490 55.6 3.3e-192 669.5
Sed03g1410 . 27 710 Mechanosensitive Ion Channel Family AT5G10490 55.3 1.8e-190 663.7
Sed04g0205 . 15 661 Mechanosensitive Ion Channel Family AT1G58200 55.9 1.6e-194 677.2
Sed03g1409 . 10 686 Mechanosensitive Ion Channel Family AT1G58200 54.5 4.2e-187 652.5
Sed03g1410 . 10 690 Mechanosensitive Ion Channel Family AT1G58200 54.2 2.3e-185 646.7
Sed13g1078 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1077 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed13g1079 . 52 690 Mechanosensitive Ion Channel Family AT1G58200 54.3 5.9e-173 605.5
Sed05g3519 . 41 903 Mechanosensitive Ion Channel Family AT1G53470 56.7 2.9e-265 912.5
Sed01g0647 . 45 883 Mechanosensitive Ion Channel Family AT1G53470 55.0 1.1e-251 867.5
Sed04g3825 . 76 916 Mechanosensitive Ion Channel Family AT1G53470 51.0 8.0e-231 798.1
Sed05g2203 . 63 907 Mechanosensitive Ion Channel Family AT1G53470 50.2 4.4e-229 792.3
Sed05g3520 . 41 645 Mechanosensitive Ion Channel Family AT1G53470 52.1 1.7e-156 551.2
Sed05g3519 . 41 898 Mechanosensitive Ion Channel Family AT3G14810 52.5 4.7e-236 815.5
Sed01g0647 . 68 878 Mechanosensitive Ion Channel Family AT3G14810 54.7 3.1e-232 802.7
Sed05g3519 . 49 903 Mechanosensitive Ion Channel Family AT1G78610 58.8 6.3e-273 937.9
Sed01g0647 . 49 883 Mechanosensitive Ion Channel Family AT1G78610 57.4 1.6e-268 923.3
Sed05g2203 . 62 913 Mechanosensitive Ion Channel Family AT1G78610 54.4 1.4e-251 867.1
Sed04g3825 . 68 915 Mechanosensitive Ion Channel Family AT1G78610 54.5 2.0e-247 853.2
Sed01g2461 . 112 689 Mechanosensitive Ion Channel Family AT1G78610 50.6 6.3e-164 575.9
Sed05g3520 . 49 645 Mechanosensitive Ion Channel Family AT1G78610 53.9 2.9e-161 567.0
Sed05g3519 . 193 899 Mechanosensitive Ion Channel Family AT2G17000 60.4 3.1e-232 802.7
Sed01g0647 . 191 879 Mechanosensitive Ion Channel Family AT2G17000 61.1 1.1e-229 794.3
Sed05g2203 . 165 902 Mechanosensitive Ion Channel Family AT2G17000 54.6 1.4e-216 750.7
Sed04g3825 . 248 917 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.8e-210 728.0
Sed05g3520 . 193 645 Mechanosensitive Ion Channel Family AT2G17000 57.2 1.1e-131 468.8
Sed05g2203 . 4 656 Mechanosensitive Ion Channel Family AT2G17010 50.5 4.3e-160 562.8
Sed05g3519 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed05g3520 . 1 642 Mechanosensitive Ion Channel Family AT2G17010 50.9 2.1e-154 543.9
Sed01g0647 . 1 622 Mechanosensitive Ion Channel Family AT2G17010 50.1 2.4e-150 530.4
Sed05g1786 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1787 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed05g1789 . 77 728 Mechanosensitive Ion Channel Family AT5G19520 51.1 1.3e-178 624.4
Sed08g0903 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0904 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed08g0905 . 60 754 Mechanosensitive Ion Channel Family AT5G12080 53.5 2.7e-200 696.4
Sed12g1723 . 48 732 Mechanosensitive Ion Channel Family AT5G12080 53.7 8.0e-200 694.9
Sed05g1786 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1787 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed05g1789 . 72 728 Mechanosensitive Ion Channel Family AT5G12080 55.0 4.0e-191 666.0
Sed13g1901 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 53.8 2.3e-183 640.2
Sed13g1900 . 69 714 Mechanosensitive Ion Channel Family AT5G12080 52.4 1.0e-175 614.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016415 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 8