Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2461 ATGGCTTCGAAGGAAGAAGTATTTCTCAAGATCGACAGCTTCGGAAATGGGGGCGACAAGAAAATCCAGGGTTTACCAGAGAAATCGCCACAAACCATGAGACGAAGAGGCAAAGAGTTTCCAGAGCCGGAAACTCGCCGGCCCGGCGGCGGCGAGGTTCTCCGGTGCAGTTCCTACGCTTCATTTCGTGGAAGCTCATGGAGCTCGCCGATTAGCAAGAGATCTCGGCTGATGGATCCGCCTGAGGAAGATTCTTCTCAAAAGCTTGAAACCGCCGTGAAAGATGAAGGCAACAACAACAACAACGACGACGACAACAACAATCAGGATGATACAGAAGATATGCCTGAAGAATACGATCAACTGAAGCTAAGCCCCTTCTTTATTTTTCAGTTGGTTCTTTCTGTTTTTGTTATTGTGGGTTTGATTTGCAATCGATGGGTTTCGATCTTGAAGAGGGAGACGATTTGGGGTCTTCCGTTGTGGAAATGGGAACTGACTGTTCTAGCTGTGATCTGTGGGCATTTGGTTTCGATTTTGGCCGTTCGATTGATTGTGAAAATCATCGAGATGAATTTTTTGTTGAGGAAACGTGTTCTGTATTTCGTTTATGGGTTAAGGAATTCTGTTCAAATTTGCTTGTGGGTGTCTTTGATTTTGCTTGTTTGGCATTTCATTTTCAACCACAAGGTTCAGATTAAGACTCAGAGTAAGATTTTACCTTATGTTACCAAGATTTTCATCTGTTTTCTCGTGGGTGCTTCGATTTGGCTTCTGAAAACCCTTGCCATTAAAATTCTGGCTTCGTTTTTTCATGTTAATCACTACTTTGAAAGGCTTAAGGAGGCTTTGTTTAGTCAGTTTGTGATTGTGAGTCTCTCTGGTTTGCCATTGTTCAAGCGGCCGAATACTAAAGATGTGATGATGGGAGACCAGAATGCTGATGGAAGAGAAGAAAGTCCCAAAAGTGGGAGAGTTATATGCAGTGGGAGACTTGTAGATTGCAATCGATCGAGACCGTTGAAGCCCGATTCGGTTAAAGAAGATGAGGAAATCCCAGTTGATCAGTTGAATAAAATGAACCAGAAGAATATATCTGCTTGGAATATGAGGAGAATGATGAATATTATAAGAAAGGGAGCTTTGTTAACTCTTGATGAGAAGATATTGTCAGAGACGAATGAAGAATCATTGTTGCAGATTAGGAGTGAACGGCAGGCGAAAGAGGCAGCTGAGAAGATTTTCCAACGAGTTGTTCAACGTGGGTCAGACTGTATTTATCTGGAAGATGTAATGCGATTTATGAACAAAGAGGAAGCTCTAATGACCCTGAGTTTATTTGGAACAACCGCTGAAACCCAATGCATTGATGAGTCCTCTTTTAGAGAGTGGATGGTAAATGCATTTAAGCAGAGAAAAGTTCTTGTATTATCTCTCGGTGATGCAAATACAGCTGTTGATGATCTTCACAGCTTGCTGAACATCTTTGTAGCTATAATAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCGTTCGGCACTTTCTCATCTTCATAACTTCACAGCTTCTACTGCTGGTTTTTATTTTTGGTAACACATGTAAGACAGTCTTCGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTTGACATTGGTGATCGCTGCGAAGTAGACGGTGTCCAGATGATTGTTGAAGAGATGAAGATATTAACAACTGTTTTTCTGAGATATGATAACCAGAAGATCACTTACCCCAACAGTGTGCTGGCTACTAAAGCCATTGGCAATTACTACCGCAGTCCAGACATGGGAGAGGGAGTTGATTTCTATGTCCACATCTCAACTCCATGGGAGAAAGTTGCCCTTTTGAAAGAACGGATAACAAGGTACGTAGAGAGCATGAGCGAGCTATGGCATCCAAATCCACAGATTGTGATGAAGGAAATTGAAGATCTGGAGAAGGTGAAGATGTCAGTTTGTGTTACACACAAAATGAACCACCAAGACATGAAAGAGAGATGGAACAGGAGAGCTGTGCTGGTTGAAGAGATTGTCACAATTTTGGAGTCAACTTGA 2082 41.93 MASKEEVFLKIDSFGNGGDKKIQGLPEKSPQTMRRRGKEFPEPETRRPGGGEVLRCSSYASFRGSSWSSPISKRSRLMDPPEEDSSQKLETAVKDEGNNNNNDDDNNNQDDTEDMPEEYDQLKLSPFFIFQLVLSVFVIVGLICNRWVSILKRETIWGLPLWKWELTVLAVICGHLVSILAVRLIVKIIEMNFLLRKRVLYFVYGLRNSVQICLWVSLILLVWHFIFNHKVQIKTQSKILPYVTKIFICFLVGASIWLLKTLAIKILASFFHVNHYFERLKEALFSQFVIVSLSGLPLFKRPNTKDVMMGDQNADGREESPKSGRVICSGRLVDCNRSRPLKPDSVKEDEEIPVDQLNKMNQKNISAWNMRRMMNIIRKGALLTLDEKILSETNEESLLQIRSERQAKEAAEKIFQRVVQRGSDCIYLEDVMRFMNKEEALMTLSLFGTTAETQCIDESSFREWMVNAFKQRKVLVLSLGDANTAVDDLHSLLNIFVAIIILVIWLIILGTPVRHFLIFITSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDIGDRCEVDGVQMIVEEMKILTTVFLRYDNQKITYPNSVLATKAIGNYYRSPDMGEGVDFYVHISTPWEKVALLKERITRYVESMSELWHPNPQIVMKEIEDLEKVKMSVCVTHKMNHQDMKERWNRRAVLVEEIVTILEST 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18343444 18349838 - Sed0028199.1 Sed01g2461 701765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2461 693 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 48 691 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Sed01g2461 693 Gene3D - 550 599 IPR023408 -
Sed01g2461 693 PIRSF Memb_At2g17000 21 693 IPR016688 -
Sed01g2461 693 MobiDBLite consensus disorder prediction 1 116 - -
Sed01g2461 693 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed01g2461 693 SUPERFAMILY Sm-like ribonucleoproteins 540 599 IPR010920 -
Sed01g2461 693 MobiDBLite consensus disorder prediction 59 73 - -
Sed01g2461 693 MobiDBLite consensus disorder prediction 31 49 - -
Sed01g2461 693 FunFam Predicted mechanosensitive ion channel 550 599 - -
Sed01g2461 693 MobiDBLite consensus disorder prediction 76 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2461 Sed-Chr1:18343444 Sed05g2203 Sed-Chr5:34836664 4.90E-159 dispersed
Sed01g2461 Sed-Chr1:18343444 Sed05g3519 Sed-Chr5:43835163 1.10E-179 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2461 K22048 - mdm:103410417 741.88