Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2462 ATGTGGAAATTGGATCGAATCTGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTTTCATGCACAAAAATCTTCTTAACATGGCACATGATCCTGCGACTCGACCTGCAATTGATGTCCGTCTTGTGCAGGTTCATTCGTCTCCTGTCACAAATTCTGGCAAGTTCCTTCATTCAAACTCGAAGGAAGAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACCGAGGTCGAATATGGTTTTGTGACCAGCCAATTACATGATATAAATCATCCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCATTGGATGTCTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAGGATATACTGGCTGAAGAAATATCAAAGATTCAGAAAAGGGATCATCTGTTTACACCTTGGAGCATTTTCCCTACTGAAAAGAAAGAAAAAATTGCAGTCAAGTTCATCACAAATTATGTCAACATTCCAAGGGATGAAGTTGATGTATGGGAAATTGATGCGAGCCTGCTAATCTATGAGAAGAAAATTGCGTCTGGATCTTTTAGCGACTTGTATAAAGGCACTTTCTATGGTCAAGATGTGGCTATTAAGATTCTAAAAGATGGAAACTTGAATGAGACTGTATGGCGGGAATTCGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCAAATTTATTGGTGCATCTACCAGACCTCCAAGCTTTTTTATTGTTACAGAATACATGTCTGGTGGAAGCATGCACGACATTTTACATCAACGAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAATAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAAGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCACAATCTGGTGTAATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGATATTTGTTGTTGGTAAATGTAAGGTTATCGAGCACAAACCATATGATCATAAAGCTGACGTTTATAGCTTTGGGATATTGTTGTGGGAGATGCTTACAGGACAGCTGCCTTATGATAACTTGACTCCGTTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTCTGAGGCCCAAGATTCCGAAGCATGCTCATCCAATCATGGTGGAGTTGCTGGAGAGATGCTGGCGTCAAGATCCATCTTTAAGACCTGAATTTTCGGAAATTACAAAACTGTTGCAGCAGACGCTGAAGGAGGTAGGGAAAAGTTCTGCCGAAACTCTTCAAATTTATTGCTTCAAATGA 1527 41.19 MWKLDRIWYAMDVNVERAEDVFMHKNLLNMAHDPATRPAIDVRLVQVHSSPVTNSGKFLHSNSKEEVDQRFSDYDSNQRHHPPPAFGSSTEVEYGFVTSQLHDINHPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRDHLFTPWSIFPTEKKEKIAVKFITNYVNIPRDEVDVWEIDASLLIYEKKIASGSFSDLYKGTFYGQDVAIKILKDGNLNETVWREFAQEIHIMRKLRHKNVVKFIGASTRPPSFFIVTEYMSGGSMHDILHQRKGVLSFPSLLRVAVDVSKGMNYLHQNNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEIFVVGKCKVIEHKPYDHKADVYSFGILLWEMLTGQLPYDNLTPLQAAVGVVQKGLRPKIPKHAHPIMVELLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETLQIYCFK 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18350950 18358917 - Sed0015480.1 Sed01g2462 701766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2462 508 PANTHER SERINE-THREONINE PROTEIN KINASE 81 491 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g2462 508 ProSiteProfiles Protein kinase domain profile. 230 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 Coils Coil 166 186 - -
Sed01g2462 508 SMART serkin_6 230 491 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 ProSiteProfiles ACT domain profile. 116 193 IPR002912 -
Sed01g2462 508 SUPERFAMILY Protein kinase-like (PK-like) 209 486 IPR011009 -
Sed01g2462 508 SUPERFAMILY ACT-like 114 182 IPR045865 -
Sed01g2462 508 Gene3D - 114 187 - -
Sed01g2462 508 Gene3D Phosphorylase Kinase; domain 1 223 308 - -
Sed01g2462 508 Pfam Protein tyrosine and serine/threonine kinase 232 486 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 Gene3D Transferase(Phosphotransferase) domain 1 309 505 - -
Sed01g2462 508 PRINTS Tyrosine kinase catalytic domain signature 341 359 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 PRINTS Tyrosine kinase catalytic domain signature 414 436 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 PRINTS Tyrosine kinase catalytic domain signature 304 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 PRINTS Tyrosine kinase catalytic domain signature 458 480 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2462 508 CDD STKc_MAP3K-like 236 487 - -
Sed01g2462 508 FunFam Serine/threonine-protein kinase isoform 1 219 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2462 Sed-Chr1:18350950 Sed01g2464 Sed-Chr1:18350950 2.70E-295 dispersed
Sed01g2462 Sed-Chr1:18350950 Sed01g2463 Sed-Chr1:18350950 2.00E-295 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78672 PF07714 PK_Tyr_Ser-Thr 1.40E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2462 - - - 0.0