Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2463 ATGTGGAAATTGGATCGAATCTGGTATGCTATGGACGTCAACGTAGAGAGGGCTGAAGATGTTTTCATGCACAAAAATCTTCTTAACATGGCACATGATCCTGCGACTCGACCTGCAATTGATGTCCGTCTTGTGCAGGTTCATTCGTCTCCTGTCACAAATTCTGGCAAGTTCCTTCATTCAAACTCGAAGGAAGAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACCGAGGTCGAATATGGTTTTGTGACCAGCCAATTACATGATATAAATCATCCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCATTGGATGTCTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAGGATATACTGGCTGAAGAAATATCAAAGATTCAGAAAAGGGATCATCTGTTTACACCTTGGAGCATTTTCCCTACTGAAAAGAAAGAAAAAATTGCAGTCAAGTTCATCACAAATTATGTCAACATTCCAAGGGATGAAGTTGATGTATGGGAAATTGATGCGAGCCTGCTAATCTATGAGAAGAAAATTGCGTCTGGATCTTTTAGCGACTTGTATAAAGGCACTTTCTATGGTCAAGATGTGGCTATTAAGATTCTAAAAGATGGAAACTTGAATGAGACTGTATGGCGGGAATTCGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCAAATTTATTGGTGCATCTACCAGACCTCCAAGCTTTTTTATTGTTACAGAATACATGTCTGGTGGAAGCATGCACGACATTTTACATCAACGAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAATAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAAGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCACAATCTGGTGTAATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGGTTATCGAGCACAAACCATATGATCATAAAGCTGACGTTTATAGCTTTGGGATATTGTTGTGGGAGATGCTTACAGGACAGCTGCCTTATGATAACTTGACTCCGTTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTCTGAGGCCCAAGATTCCGAAGCATGCTCATCCAATCATGGTGGAGTTGCTGGAGAGATGCTGGCGTCAAGATCCATCTTTAAGACCTGAATTTTCGGAAATTACAAAACTGTTGCAGCAGACGCTGAAGGAGGTAGGGAAAAGTTCTGCCGAAACTCTTCAAATTTATTGCTTCAAATGA 1503 41.45 MWKLDRIWYAMDVNVERAEDVFMHKNLLNMAHDPATRPAIDVRLVQVHSSPVTNSGKFLHSNSKEEVDQRFSDYDSNQRHHPPPAFGSSTEVEYGFVTSQLHDINHPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRDHLFTPWSIFPTEKKEKIAVKFITNYVNIPRDEVDVWEIDASLLIYEKKIASGSFSDLYKGTFYGQDVAIKILKDGNLNETVWREFAQEIHIMRKLRHKNVVKFIGASTRPPSFFIVTEYMSGGSMHDILHQRKGVLSFPSLLRVAVDVSKGMNYLHQNNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGILLWEMLTGQLPYDNLTPLQAAVGVVQKGLRPKIPKHAHPIMVELLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETLQIYCFK 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18350950 18358917 - Sed0015480.2 Sed01g2463 701767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2463 500 PRINTS Tyrosine kinase catalytic domain signature 450 472 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 PRINTS Tyrosine kinase catalytic domain signature 304 317 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 PRINTS Tyrosine kinase catalytic domain signature 341 359 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 PRINTS Tyrosine kinase catalytic domain signature 406 428 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 PRINTS Tyrosine kinase catalytic domain signature 387 397 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 347 359 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 ProSiteProfiles Protein kinase domain profile. 230 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 Coils Coil 166 186 - -
Sed01g2463 500 SMART serkin_6 230 483 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 Gene3D - 114 187 - -
Sed01g2463 500 ProSiteProfiles ACT domain profile. 116 193 IPR002912 -
Sed01g2463 500 SUPERFAMILY ACT-like 114 182 IPR045865 -
Sed01g2463 500 CDD STKc_MAP3K-like 236 479 - -
Sed01g2463 500 Pfam Protein tyrosine and serine/threonine kinase 232 478 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2463 500 SUPERFAMILY Protein kinase-like (PK-like) 209 478 IPR011009 -
Sed01g2463 500 Gene3D Transferase(Phosphotransferase) domain 1 309 497 - -
Sed01g2463 500 PANTHER SERINE-THREONINE PROTEIN KINASE 81 483 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g2463 500 FunFam Serine/threonine-protein kinase isoform 1 219 308 - -
Sed01g2463 500 Gene3D Phosphorylase Kinase; domain 1 223 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2463 Sed-Chr1:18350950 Sed01g2465 Sed-Chr1:18350950 4.30E-290 dispersed
Sed01g2462 Sed-Chr1:18350950 Sed01g2463 Sed-Chr1:18350950 2.00E-295 tandem
Sed01g2463 Sed-Chr1:18350950 Sed01g2464 Sed-Chr1:18350950 6.90E-288 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78673 PF07714 PK_Tyr_Ser-Thr 5.20E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2463 - - - 0.0