Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2464 ATGGACGTCAACGTAGAGAGGGCTGAAGATGTTTTCATGCACAAAAATCTTCTTAACATGGCACATGATCCTGCGACTCGACCTGCAATTGATGTCCGTCTTGTGCAGGTTCATTCGTCTCCTGTCACAAATTCTGGCAAGTTCCTTCATTCAAACTCGAAGGAAGAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACCGAGGTCGAATATGGTTTTGTGACCAGCCAATTACATGATATAAATCATCCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCATTGGATGTCTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAGGATATACTGGCTGAAGAAATATCAAAGATTCAGAAAAGGGATCATCTGTTTACACCTTGGAGCATTTTCCCTACTGAAAAGAAAGAAAAAATTGCAGTCAAGTTCATCACAAATTATGTCAACATTCCAAGGGATGAAGTTGATGTATGGGAAATTGATGCGAGCCTGCTAATCTATGAGAAGAAAATTGCGTCTGGATCTTTTAGCGACTTGTATAAAGGCACTTTCTATGGTCAAGATGTGGCTATTAAGATTCTAAAAGATGGAAACTTGAATGAGACTGTATGGCGGGAATTCGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCAAATTTATTGGTGCATCTACCAGACCTCCAAGCTTTTTTATTGTTACAGAATACATGTCTGGTGGAAGCATGCACGACATTTTACATCAACGAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAATAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAAGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCACAATCTGGTGTAATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGATATTTGTTGTTGGTAAATGTAAGGTTATCGAGCACAAACCATATGATCATAAAGCTGACGTTTATAGCTTTGGGATATTGTTGTGGGAGATGCTTACAGGACAGCTGCCTTATGATAACTTGACTCCGTTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTCTGAGGCCCAAGATTCCGAAGCATGCTCATCCAATCATGGTGGAGTTGCTGGAGAGATGCTGGCGTCAAGATCCATCTTTAAGACCTGAATTTTCGGAAATTACAAAACTGTTGCAGCAGACGCTGAAGGAGGTAGGGAAAAGTTCTGCCGAAACTCTTCAAATTTATTGCTTCAAATGA 1497 41.22 MDVNVERAEDVFMHKNLLNMAHDPATRPAIDVRLVQVHSSPVTNSGKFLHSNSKEEVDQRFSDYDSNQRHHPPPAFGSSTEVEYGFVTSQLHDINHPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRDHLFTPWSIFPTEKKEKIAVKFITNYVNIPRDEVDVWEIDASLLIYEKKIASGSFSDLYKGTFYGQDVAIKILKDGNLNETVWREFAQEIHIMRKLRHKNVVKFIGASTRPPSFFIVTEYMSGGSMHDILHQRKGVLSFPSLLRVAVDVSKGMNYLHQNNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEIFVVGKCKVIEHKPYDHKADVYSFGILLWEMLTGQLPYDNLTPLQAAVGVVQKGLRPKIPKHAHPIMVELLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETLQIYCFK 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18350950 18358917 - Sed0015480.3 Sed01g2464 701768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2464 498 Gene3D Phosphorylase Kinase; domain 1 213 298 - -
Sed01g2464 498 PRINTS Tyrosine kinase catalytic domain signature 294 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 PRINTS Tyrosine kinase catalytic domain signature 448 470 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 PRINTS Tyrosine kinase catalytic domain signature 404 426 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 PRINTS Tyrosine kinase catalytic domain signature 331 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 SUPERFAMILY Protein kinase-like (PK-like) 199 476 IPR011009 -
Sed01g2464 498 Coils Coil 156 176 - -
Sed01g2464 498 Gene3D Transferase(Phosphotransferase) domain 1 299 495 - -
Sed01g2464 498 Gene3D - 104 177 - -
Sed01g2464 498 ProSiteProfiles ACT domain profile. 106 183 IPR002912 -
Sed01g2464 498 ProSiteProfiles Protein kinase domain profile. 220 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 PANTHER SERINE-THREONINE PROTEIN KINASE 71 481 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g2464 498 CDD STKc_MAP3K-like 226 477 - -
Sed01g2464 498 SMART serkin_6 220 481 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 SUPERFAMILY ACT-like 104 172 IPR045865 -
Sed01g2464 498 Pfam Protein tyrosine and serine/threonine kinase 222 476 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2464 498 FunFam Serine/threonine-protein kinase isoform 1 209 298 - -
Sed01g2464 498 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2462 Sed-Chr1:18350950 Sed01g2464 Sed-Chr1:18350950 2.70E-295 dispersed
Sed01g2464 Sed-Chr1:18350950 Sed04g3824 Sed-Chr4:46695465 1.20E-167 dispersed
Sed01g2463 Sed-Chr1:18350950 Sed01g2464 Sed-Chr1:18350950 6.90E-288 tandem
Sed01g2464 Sed-Chr1:18350950 Sed01g2465 Sed-Chr1:18350950 4.00E-288 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78674 PF07714 PK_Tyr_Ser-Thr 1.30E-68 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2464 - - - 0.0