Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2465 ATGGACGTCAACGTAGAGAGGGCTGAAGATGTTTTCATGCACAAAAATCTTCTTAACATGGCACATGATCCTGCGACTCGACCTGCAATTGATGTCCGTCTTGTGCAGGTTCATTCGTCTCCTGTCACAAATTCTGGCAAGTTCCTTCATTCAAACTCGAAGGAAGAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGACACCACCCCCCACCAGCATTTGGTTCATCAACCGAGGTCGAATATGGTTTTGTGACCAGCCAATTACATGATATAAATCATCCTGGCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAACTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCACATGCTTTTTCAACAACAGATGGCTTTTCATTGGATGTCTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAGGATATACTGGCTGAAGAAATATCAAAGATTCAGAAAAGGGATCATCTGTTTACACCTTGGAGCATTTTCCCTACTGAAAAGAAAGAAAAAATTGCAGTCAAGTTCATCACAAATTATGTCAACATTCCAAGGGATGAAGTTGATGTATGGGAAATTGATGCGAGCCTGCTAATCTATGAGAAGAAAATTGCGTCTGGATCTTTTAGCGACTTGTATAAAGGCACTTTCTATGGTCAAGATGTGGCTATTAAGATTCTAAAAGATGGAAACTTGAATGAGACTGTATGGCGGGAATTCGCTCAAGAAATTCATATCATGAGAAAACTTCGGCATAAGAATGTTGTCAAATTTATTGGTGCATCTACCAGACCTCCAAGCTTTTTTATTGTTACAGAATACATGTCTGGTGGAAGCATGCACGACATTTTACATCAACGAAAGGGCGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAGTTGATGTGTCCAAGGGAATGAACTATTTGCATCAAAATAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGATGGATGAAGATGGGGTTGTCAAAGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCACAATCTGGTGTAATGACTGCAGAAACTGGAACATACCGTTGGATGGCTCCAGAGGTTATCGAGCACAAACCATATGATCATAAAGCTGACGTTTATAGCTTTGGGATATTGTTGTGGGAGATGCTTACAGGACAGCTGCCTTATGATAACTTGACTCCGTTACAAGCAGCAGTAGGCGTGGTCCAGAAGGGTCTGAGGCCCAAGATTCCGAAGCATGCTCATCCAATCATGGTGGAGTTGCTGGAGAGATGCTGGCGTCAAGATCCATCTTTAAGACCTGAATTTTCGGAAATTACAAAACTGTTGCAGCAGACGCTGAAGGAGGTAGGGAAAAGTTCTGCCGAAACTCTTCAAATTTATTGCTTCAAATGA 1473 41.48 MDVNVERAEDVFMHKNLLNMAHDPATRPAIDVRLVQVHSSPVTNSGKFLHSNSKEEVDQRFSDYDSNQRHHPPPAFGSSTEVEYGFVTSQLHDINHPGTFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRDHLFTPWSIFPTEKKEKIAVKFITNYVNIPRDEVDVWEIDASLLIYEKKIASGSFSDLYKGTFYGQDVAIKILKDGNLNETVWREFAQEIHIMRKLRHKNVVKFIGASTRPPSFFIVTEYMSGGSMHDILHQRKGVLSFPSLLRVAVDVSKGMNYLHQNNIIHRDLKAANLLMDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGILLWEMLTGQLPYDNLTPLQAAVGVVQKGLRPKIPKHAHPIMVELLERCWRQDPSLRPEFSEITKLLQQTLKEVGKSSAETLQIYCFK 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18350950 18358917 - Sed0015480.4 Sed01g2465 701769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2465 490 ProSiteProfiles Protein kinase domain profile. 220 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 Coils Coil 156 176 - -
Sed01g2465 490 SUPERFAMILY ACT-like 104 172 IPR045865 -
Sed01g2465 490 CDD STKc_MAP3K-like 226 469 - -
Sed01g2465 490 ProSiteProfiles ACT domain profile. 106 183 IPR002912 -
Sed01g2465 490 Gene3D Phosphorylase Kinase; domain 1 213 298 - -
Sed01g2465 490 SMART serkin_6 220 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 PRINTS Tyrosine kinase catalytic domain signature 396 418 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 PRINTS Tyrosine kinase catalytic domain signature 331 349 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 PRINTS Tyrosine kinase catalytic domain signature 294 307 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 PRINTS Tyrosine kinase catalytic domain signature 377 387 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 PRINTS Tyrosine kinase catalytic domain signature 440 462 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 SUPERFAMILY Protein kinase-like (PK-like) 199 468 IPR011009 -
Sed01g2465 490 Gene3D - 104 177 - -
Sed01g2465 490 FunFam Serine/threonine-protein kinase isoform 1 209 298 - -
Sed01g2465 490 Gene3D Transferase(Phosphotransferase) domain 1 299 487 - -
Sed01g2465 490 PANTHER SERINE-THREONINE PROTEIN KINASE 71 473 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed01g2465 490 Pfam Protein tyrosine and serine/threonine kinase 222 468 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2465 490 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2463 Sed-Chr1:18350950 Sed01g2465 Sed-Chr1:18350950 4.30E-290 dispersed
Sed01g2465 Sed-Chr1:18350950 Sed04g3824 Sed-Chr4:46695465 1.30E-169 dispersed
Sed01g2464 Sed-Chr1:18350950 Sed01g2465 Sed-Chr1:18350950 4.00E-288 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78675 PF07714 PK_Tyr_Ser-Thr 5.00E-72 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2465 - - - 0.0