Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed01g2477 | ATGCAAACCATTTCCTTTTGTGTCTTTGTTTTGGTTTCTGTCATCTTCTTCCTTCTTTCAGCTCAAAATGCTAAAATAATTGCAGCTGCTGCTCAAGCTCCAAACAATGGCGTTTATATCGTCTACATGGGATCCGCCTCGGGTTCGAGGCTCGACTTCCCTCGCCTACTTAGCTCTGTAAACAGGCGGAATCCAAAGGCAGTGGTGCACACGTACAAACATGGCTTCACAGGATTCGCAGCTCGCCTATCCGAACACGAAGCCGAGGCCATGAAACATACACCAGGAGTTGTTTCAGTGTTTCCAGATCCCATATTGAAGCTGCACACAACTCATTCCTGGGATTTCTTGGTCAGTCAGACAAGTGTGAAGATCGACGCCAATCCCAAATCAGACCCCCCGAGTTCTTCCTCCCAATCATCCGATACCATTATCGGCATCTTGGACACCGGTATCTGGCCGGAATCTGAGAGCTTTAATGACGAGGGTATGGGTCCAGTTCCGGCGAGGTGGAAAGGAACTTGCATGGCTGGCGATGACTTCACTTCCACCAGCTGTAACAAAAAAATCATAGGAGCAAGATATTACAATAGTTCAGACGACGACGAGATAAAATTTCACTCACCTCGAGACGAAGCTGGACATGGCACCCACGTGGCATCAACGGCGGCGGGCAGCGCGGTGGCCAATGCATCCTACTACGGCCTGGCAGCAGGGACGGCCAAGGGCGGCTCGCCCGGGTCAAGGATCGCAATGTACAGAGTCTGTACACCCGATGGCTGCCGTGGCTCGGCCATCATGGCGGCCTTTGACGACGCCATCGCCGATGGCGTCGACTGCATGTCCCTGTCACTCGGGACGCCCTACTACTTGAGACAGGAGCTGAAGAAAGACCCTATTGCCATTGGAGCCTTCCATGCAGTTGAGAAGGGAATTGTGGTTGTCTGCTCTGCTGGAAATGATGGCCCCACCACTGGCTCTGTTGTGAATGATGCTCCCTGGATTTTGACTGTGGCTGCCTCTACTATTGATCGTGTTTTTGAGTCTGATGTTTTGTTGGGTAACAACAAAGTCATCAAGGGAGAAGGTATAAATTTCTCAGCTCTTAAAAAATCCCCTGTATACCCACTGATACAAGGAAAGTCAGCCAAGAAAGCAAACGCCAGTGAAGACAGTGCGAGGATTTGCTCTGAAGACTCCATGGACGAAGCTCTGGTGAAGGGGAAGATAGTTATATGTGAAAGCAGTGCCGAAGAAGGCCGTTCGGATTGGCAGAGTCAGTCCGAAACAGTGAAGAGTCTTGGAGGGGTCGGCCTAGTTTTGATTGATGATCAATCAAAACTAGTTGAAGAGAAGTTTACTTTTCCCATGACAGCTATTGGCAAAACGGATGGTGCTGAGCTCATCTCCTATGTCAATTCAAGCGGGAATCCAGTTGCTACAATCCTACCCACTGTGACTGTAATCAACCATAAGCCAGCGCCTGCTATAGCATACTTTTCATCTAGAGGGCCTAATCCTGCAGTACTCAACATGATCAAGCCGGACATATCAGCACCAGGAGTAAACATTCTTGCAGCGTGGCTTGGCAATGACTCAAACTCTACTCCGCAACCAGCAAATTCGCCACTTTTCAACGTCATATCAGGGACTTCAATGTCGTGCCCGCACGTCTCTGGTGTGGCGGCCTTCGTTAAATCTCAAAACCCGACATGGAGTCCCTCAACAATCAAGTCGGCCATCATGACAACAGCAATACAAAATAATAACATGGGGTCATCGATTACTCTGGATACGGGCTCGGTAGCGACGCCTTATGATTATGGGGCAGGAGAAATATCAACCATTGGAGCATTACAACCAGGACTAGTCTATGAAACTACTATAACAGACTACTTAAACTACCTTTGCTACCGAGGTTATAACCTGTCCACCATTAAGAGCATCTCAAATTCTGTTCCTAATGGATTTGATTGCCCCAAAAATTCAACTGCAGACAACATATCCAATATGAACTACCCAACAATAGCAGTGTCCGAATTGAAAGGCAAGGAAAGCAAGAAAATAAGTAGAACAGTTACAAATGTCGGTGGCGATGGCGAAACAGTTTATACAGTTAGCGTGGACGCACCAGGGGAAGTGGATGTAAAAGTGATTCCAGAGAAATTGGAATTTACAAAGAACAATCAGAAGCAGAGTTACCAAGTGGAGTTCGCCTCAACTGTAGGCACACTGAAGAAAGAAGTCTTTGGATTAATAACTTGGACCAATGGAAAGTATCGAGTTCGGAGTTCATTTGTGGTAACTAGTAAGAGTAGTGAGCAAGAAAATGACCTATAA | 2340 | 47.44 | MQTISFCVFVLVSVIFFLLSAQNAKIIAAAAQAPNNGVYIVYMGSASGSRLDFPRLLSSVNRRNPKAVVHTYKHGFTGFAARLSEHEAEAMKHTPGVVSVFPDPILKLHTTHSWDFLVSQTSVKIDANPKSDPPSSSSQSSDTIIGILDTGIWPESESFNDEGMGPVPARWKGTCMAGDDFTSTSCNKKIIGARYYNSSDDDEIKFHSPRDEAGHGTHVASTAAGSAVANASYYGLAAGTAKGGSPGSRIAMYRVCTPDGCRGSAIMAAFDDAIADGVDCMSLSLGTPYYLRQELKKDPIAIGAFHAVEKGIVVVCSAGNDGPTTGSVVNDAPWILTVAASTIDRVFESDVLLGNNKVIKGEGINFSALKKSPVYPLIQGKSAKKANASEDSARICSEDSMDEALVKGKIVICESSAEEGRSDWQSQSETVKSLGGVGLVLIDDQSKLVEEKFTFPMTAIGKTDGAELISYVNSSGNPVATILPTVTVINHKPAPAIAYFSSRGPNPAVLNMIKPDISAPGVNILAAWLGNDSNSTPQPANSPLFNVISGTSMSCPHVSGVAAFVKSQNPTWSPSTIKSAIMTTAIQNNNMGSSITLDTGSVATPYDYGAGEISTIGALQPGLVYETTITDYLNYLCYRGYNLSTIKSISNSVPNGFDCPKNSTADNISNMNYPTIAVSELKGKESKKISRTVTNVGGDGETVYTVSVDAPGEVDVKVIPEKLEFTKNNQKQSYQVEFASTVGTLKKEVFGLITWTNGKYRVRSSFVVTSKSSEQENDL | 779 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 18525072 | 18531254 | + | Sed0027143.1 | Sed01g2477 | 701781 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed01g2477 | 779 | CDD | Peptidases_S8_3 | 106 | 586 | IPR034197 | - | |
Sed01g2477 | 779 | ProSitePatterns | Serine proteases, subtilase family, histidine active site. | 215 | 225 | IPR022398 | - | |
Sed01g2477 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 549 | 565 | IPR015500 | - | |
Sed01g2477 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 211 | 224 | IPR015500 | - | |
Sed01g2477 | 779 | PRINTS | Subtilisin serine protease family (S8) signature | 140 | 159 | IPR015500 | - | |
Sed01g2477 | 779 | SUPERFAMILY | Subtilisin-like | 138 | 620 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g2477 | 779 | Pfam | Subtilase family | 141 | 592 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
Sed01g2477 | 779 | FunFam | subtilisin-like protease SBT1.5 | 344 | 489 | - | - | |
Sed01g2477 | 779 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 550 | 560 | IPR023828 | - | |
Sed01g2477 | 779 | Pfam | Fibronectin type-III domain | 670 | 768 | IPR041469 | - | |
Sed01g2477 | 779 | Gene3D | Peptidase S8/S53 domain | 142 | 632 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Sed01g2477 | 779 | Pfam | Peptidase inhibitor I9 | 38 | 109 | IPR010259 | - | |
Sed01g2477 | 779 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 21 | 109 | IPR037045 | - | |
Sed01g2477 | 779 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 113 | 619 | - | - | |
Sed01g2477 | 779 | CDD | PA_subtilisin_like | 350 | 482 | - | - | |
Sed01g2477 | 779 | Pfam | PA domain | 395 | 468 | IPR003137 | - | |
Sed01g2477 | 779 | Gene3D | - | 344 | 489 | - | - | |
Sed01g2477 | 779 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 38 | 765 | IPR045051 | - | |
Sed01g2477 | 779 | FunFam | Subtilisin-like protease SBT1.5 | 142 | 353 | - | - | |
Sed01g2477 | 779 | Gene3D | - | 636 | 771 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2477 | Sed-Chr1:18525072 | Sed03g2277 | Sed-Chr3:17157814 | 1.40E-181 | dispersed | |
Sed01g2477 | Sed-Chr1:18525072 | Sed03g1334 | Sed-Chr3:8497376 | 9.20E-154 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed01g2477 | K25898 | - | csv:101213415 | 1202.19 |