Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2477 ATGCAAACCATTTCCTTTTGTGTCTTTGTTTTGGTTTCTGTCATCTTCTTCCTTCTTTCAGCTCAAAATGCTAAAATAATTGCAGCTGCTGCTCAAGCTCCAAACAATGGCGTTTATATCGTCTACATGGGATCCGCCTCGGGTTCGAGGCTCGACTTCCCTCGCCTACTTAGCTCTGTAAACAGGCGGAATCCAAAGGCAGTGGTGCACACGTACAAACATGGCTTCACAGGATTCGCAGCTCGCCTATCCGAACACGAAGCCGAGGCCATGAAACATACACCAGGAGTTGTTTCAGTGTTTCCAGATCCCATATTGAAGCTGCACACAACTCATTCCTGGGATTTCTTGGTCAGTCAGACAAGTGTGAAGATCGACGCCAATCCCAAATCAGACCCCCCGAGTTCTTCCTCCCAATCATCCGATACCATTATCGGCATCTTGGACACCGGTATCTGGCCGGAATCTGAGAGCTTTAATGACGAGGGTATGGGTCCAGTTCCGGCGAGGTGGAAAGGAACTTGCATGGCTGGCGATGACTTCACTTCCACCAGCTGTAACAAAAAAATCATAGGAGCAAGATATTACAATAGTTCAGACGACGACGAGATAAAATTTCACTCACCTCGAGACGAAGCTGGACATGGCACCCACGTGGCATCAACGGCGGCGGGCAGCGCGGTGGCCAATGCATCCTACTACGGCCTGGCAGCAGGGACGGCCAAGGGCGGCTCGCCCGGGTCAAGGATCGCAATGTACAGAGTCTGTACACCCGATGGCTGCCGTGGCTCGGCCATCATGGCGGCCTTTGACGACGCCATCGCCGATGGCGTCGACTGCATGTCCCTGTCACTCGGGACGCCCTACTACTTGAGACAGGAGCTGAAGAAAGACCCTATTGCCATTGGAGCCTTCCATGCAGTTGAGAAGGGAATTGTGGTTGTCTGCTCTGCTGGAAATGATGGCCCCACCACTGGCTCTGTTGTGAATGATGCTCCCTGGATTTTGACTGTGGCTGCCTCTACTATTGATCGTGTTTTTGAGTCTGATGTTTTGTTGGGTAACAACAAAGTCATCAAGGGAGAAGGTATAAATTTCTCAGCTCTTAAAAAATCCCCTGTATACCCACTGATACAAGGAAAGTCAGCCAAGAAAGCAAACGCCAGTGAAGACAGTGCGAGGATTTGCTCTGAAGACTCCATGGACGAAGCTCTGGTGAAGGGGAAGATAGTTATATGTGAAAGCAGTGCCGAAGAAGGCCGTTCGGATTGGCAGAGTCAGTCCGAAACAGTGAAGAGTCTTGGAGGGGTCGGCCTAGTTTTGATTGATGATCAATCAAAACTAGTTGAAGAGAAGTTTACTTTTCCCATGACAGCTATTGGCAAAACGGATGGTGCTGAGCTCATCTCCTATGTCAATTCAAGCGGGAATCCAGTTGCTACAATCCTACCCACTGTGACTGTAATCAACCATAAGCCAGCGCCTGCTATAGCATACTTTTCATCTAGAGGGCCTAATCCTGCAGTACTCAACATGATCAAGCCGGACATATCAGCACCAGGAGTAAACATTCTTGCAGCGTGGCTTGGCAATGACTCAAACTCTACTCCGCAACCAGCAAATTCGCCACTTTTCAACGTCATATCAGGGACTTCAATGTCGTGCCCGCACGTCTCTGGTGTGGCGGCCTTCGTTAAATCTCAAAACCCGACATGGAGTCCCTCAACAATCAAGTCGGCCATCATGACAACAGCAATACAAAATAATAACATGGGGTCATCGATTACTCTGGATACGGGCTCGGTAGCGACGCCTTATGATTATGGGGCAGGAGAAATATCAACCATTGGAGCATTACAACCAGGACTAGTCTATGAAACTACTATAACAGACTACTTAAACTACCTTTGCTACCGAGGTTATAACCTGTCCACCATTAAGAGCATCTCAAATTCTGTTCCTAATGGATTTGATTGCCCCAAAAATTCAACTGCAGACAACATATCCAATATGAACTACCCAACAATAGCAGTGTCCGAATTGAAAGGCAAGGAAAGCAAGAAAATAAGTAGAACAGTTACAAATGTCGGTGGCGATGGCGAAACAGTTTATACAGTTAGCGTGGACGCACCAGGGGAAGTGGATGTAAAAGTGATTCCAGAGAAATTGGAATTTACAAAGAACAATCAGAAGCAGAGTTACCAAGTGGAGTTCGCCTCAACTGTAGGCACACTGAAGAAAGAAGTCTTTGGATTAATAACTTGGACCAATGGAAAGTATCGAGTTCGGAGTTCATTTGTGGTAACTAGTAAGAGTAGTGAGCAAGAAAATGACCTATAA 2340 47.44 MQTISFCVFVLVSVIFFLLSAQNAKIIAAAAQAPNNGVYIVYMGSASGSRLDFPRLLSSVNRRNPKAVVHTYKHGFTGFAARLSEHEAEAMKHTPGVVSVFPDPILKLHTTHSWDFLVSQTSVKIDANPKSDPPSSSSQSSDTIIGILDTGIWPESESFNDEGMGPVPARWKGTCMAGDDFTSTSCNKKIIGARYYNSSDDDEIKFHSPRDEAGHGTHVASTAAGSAVANASYYGLAAGTAKGGSPGSRIAMYRVCTPDGCRGSAIMAAFDDAIADGVDCMSLSLGTPYYLRQELKKDPIAIGAFHAVEKGIVVVCSAGNDGPTTGSVVNDAPWILTVAASTIDRVFESDVLLGNNKVIKGEGINFSALKKSPVYPLIQGKSAKKANASEDSARICSEDSMDEALVKGKIVICESSAEEGRSDWQSQSETVKSLGGVGLVLIDDQSKLVEEKFTFPMTAIGKTDGAELISYVNSSGNPVATILPTVTVINHKPAPAIAYFSSRGPNPAVLNMIKPDISAPGVNILAAWLGNDSNSTPQPANSPLFNVISGTSMSCPHVSGVAAFVKSQNPTWSPSTIKSAIMTTAIQNNNMGSSITLDTGSVATPYDYGAGEISTIGALQPGLVYETTITDYLNYLCYRGYNLSTIKSISNSVPNGFDCPKNSTADNISNMNYPTIAVSELKGKESKKISRTVTNVGGDGETVYTVSVDAPGEVDVKVIPEKLEFTKNNQKQSYQVEFASTVGTLKKEVFGLITWTNGKYRVRSSFVVTSKSSEQENDL 779
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18525072 18531254 + Sed0027143.1 Sed01g2477 701781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2477 779 CDD Peptidases_S8_3 106 586 IPR034197 -
Sed01g2477 779 ProSitePatterns Serine proteases, subtilase family, histidine active site. 215 225 IPR022398 -
Sed01g2477 779 PRINTS Subtilisin serine protease family (S8) signature 549 565 IPR015500 -
Sed01g2477 779 PRINTS Subtilisin serine protease family (S8) signature 211 224 IPR015500 -
Sed01g2477 779 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Sed01g2477 779 SUPERFAMILY Subtilisin-like 138 620 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g2477 779 Pfam Subtilase family 141 592 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed01g2477 779 FunFam subtilisin-like protease SBT1.5 344 489 - -
Sed01g2477 779 ProSitePatterns Serine proteases, subtilase family, serine active site. 550 560 IPR023828 -
Sed01g2477 779 Pfam Fibronectin type-III domain 670 768 IPR041469 -
Sed01g2477 779 Gene3D Peptidase S8/S53 domain 142 632 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed01g2477 779 Pfam Peptidase inhibitor I9 38 109 IPR010259 -
Sed01g2477 779 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 21 109 IPR037045 -
Sed01g2477 779 ProSiteProfiles Serine proteases, subtilase domain profile. 113 619 - -
Sed01g2477 779 CDD PA_subtilisin_like 350 482 - -
Sed01g2477 779 Pfam PA domain 395 468 IPR003137 -
Sed01g2477 779 Gene3D - 344 489 - -
Sed01g2477 779 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 38 765 IPR045051 -
Sed01g2477 779 FunFam Subtilisin-like protease SBT1.5 142 353 - -
Sed01g2477 779 Gene3D - 636 771 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2477 Sed-Chr1:18525072 Sed03g2277 Sed-Chr3:17157814 1.40E-181 dispersed
Sed01g2477 Sed-Chr1:18525072 Sed03g1334 Sed-Chr3:8497376 9.20E-154 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2477 K25898 - csv:101213415 1202.19