Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2478 ATGCAGAACGGCGATTACGGTACGGCTCCATATTTTCAATACCCAAATCTTCAAAACCTTACTCTCAATCCAAGCCCTAACCCTGTTTCCACTCCCCCCGATCGCAACCAGAGCGCTTACGCATCGGCGCCGCCCTTCGCCACCAGTTACGGCGGCGCCGATTACTCTGGTTATGCCCCTAATTATCCCCCTTACTCCCACAATCCCGATCCCGTCCCTGTATCTCCGACCGCTCCTCTTTACAACCCTCCGCCACCAAACCCTAATCTCCAGACATTCAATCCCACCCCACAACCTCCGAATTTCCCTCAATTTGAGTCTCATGTGCCTTATCAATCTCAATCTCAATCTCAGCCGCAATCGCATCATTCAGCGTACGATCAGCATCAGGCGGCTCCCAATTATGCTCCCCCTCCACCGCCTCAAATTCCCATGAATCAGAGCTCTAATTCTATCCCCAGTCCCAATTCCCCGTTCTCATCCATGTATTCGGCTCCCTTTGGATCTTTGCCCCCGCCTGCGTATGAAAACCCATATGAAAATTCGGCGAAATTTGATCAGGGAGGCGGGTATGCTGATGATAGATATGGTGGTTATGGTCGAAGTCGGTCTGATTATGGTTCAGACGTGTATGGTAAGCGACCAGAGGAGGCAGCATCGCGATTCGATTCTGGCTATGATGATGGTTATGGTGAGGGCGTGTATGCTTACCAAGGTGGCAAAGTTGAGCCTTATGGAGCTCGCGGTACAGCTCCTAAGTCTTCGACTTGGTCTGCGGCACCGGCTTTTGATGATTATGGGAGGCCGATTAATGTTCCTTCGAAGAAAGACCCTCCGCCGGCAAGTTCACTGAAAGTAGTTAGGGCGATCCCTAAGGTGGAAGCTCAAGAAGACGAGAAAAATTGGGTGCAGAAGTTCCGAGTGAAGCTTTTGGCTGAAAGTGGAGGTCAAAGCACCATGGATGTACTTTGTCAGGTTGGTCTAGATGGTATTCGTATGCTTGACCCAAATACCAGTCGTACATTAAGGATATATCCTCTTGAGACCATCACTAGATGTGAAGTATATGATTCATCTACCCTGGCTTTCTGGTCCAAGAGCTCTGTGGATATAGAGCCACGGCGTATTAGATTGCAGTCTAACAAGTACACAACCAACACGCTTCTGGACACGGTCACTGCTGCAACTGTACAGGTTAAAGAAATGGGTGGAAGTAGGTCTTCTGAATCTTTTAAGGCGCCTGAGCAGCCTACAGAGAAGAAGAAAGGGTTGGTTGATTGGGTGAACCGAATAAAGCCAGGCATTGAGGAGAAAGACCATTGGGTACCTGATGAGGCAGTCACCAAATGTACAGCCTGTGGGACAGACTTTGGGGCTTTTGTACGAAGGCATCACTGCAGAAATTGTGGAGACGTTTTCTGTGATAAATGCACCCAAGGTAGAACAGCTCTGACTGCTGAGGAGAATGCTCCTCAAGTTCGAGTCTGTGATAGATGCATGGCGGAAGTGACTCAGAGACTTGCTCATGCCAAAGAAATGGCTAGTAAGCCTGCAGGATTGCATAGTCACGAGGATCTTGCTAAAAAGCTTAAGGACGAAATGGAGAGAAACCGTAGGTCATCAGGATCCAAGTCTGATGGATCTGGGAAACGGATGAAGGAAGTTGCATGTCCTACTTGTACTGTTCATTTACAGGTTCAGGTTCCAAGCTCGGGTTCTGAGACTATCGAATGTGGGGTTTGCCAGCATCCGTTCCTTGTCAGTGCTCACTGA 1773 49.01 MQNGDYGTAPYFQYPNLQNLTLNPSPNPVSTPPDRNQSAYASAPPFATSYGGADYSGYAPNYPPYSHNPDPVPVSPTAPLYNPPPPNPNLQTFNPTPQPPNFPQFESHVPYQSQSQSQPQSHHSAYDQHQAAPNYAPPPPPQIPMNQSSNSIPSPNSPFSSMYSAPFGSLPPPAYENPYENSAKFDQGGGYADDRYGGYGRSRSDYGSDVYGKRPEEAASRFDSGYDDGYGEGVYAYQGGKVEPYGARGTAPKSSTWSAAPAFDDYGRPINVPSKKDPPPASSLKVVRAIPKVEAQEDEKNWVQKFRVKLLAESGGQSTMDVLCQVGLDGIRMLDPNTSRTLRIYPLETITRCEVYDSSTLAFWSKSSVDIEPRRIRLQSNKYTTNTLLDTVTAATVQVKEMGGSRSSESFKAPEQPTEKKKGLVDWVNRIKPGIEEKDHWVPDEAVTKCTACGTDFGAFVRRHHCRNCGDVFCDKCTQGRTALTAEENAPQVRVCDRCMAEVTQRLAHAKEMASKPAGLHSHEDLAKKLKDEMERNRRSSGSKSDGSGKRMKEVACPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18535811 18541725 - Sed0016624.1 Sed01g2478 701782

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2478 590 PANTHER PROTEIN FREE1 1 590 IPR045893 GO:0000813(PANTHER)|GO:0031902(PANTHER)|GO:0036258(InterPro)|GO:0036258(PANTHER)|GO:0043130(InterPro)|GO:0043130(PANTHER)|GO:0070676(PANTHER)
Sed01g2478 590 SUPERFAMILY FYVE/PHD zinc finger 439 520 IPR011011 -
Sed01g2478 590 MobiDBLite consensus disorder prediction 530 551 - -
Sed01g2478 590 FunFam Zinc finger, FYVE-type, endofin 431 509 - -
Sed01g2478 590 Pfam FYVE zinc finger 440 504 IPR000306 GO:0046872(InterPro)
Sed01g2478 590 Coils Coil 520 540 - -
Sed01g2478 590 SMART fyve_4 436 505 IPR000306 GO:0046872(InterPro)
Sed01g2478 590 PRINTS Proline rich extensin signature 18 30 - -
Sed01g2478 590 PRINTS Proline rich extensin signature 60 72 - -
Sed01g2478 590 PRINTS Proline rich extensin signature 133 158 - -
Sed01g2478 590 PRINTS Proline rich extensin signature 79 100 - -
Sed01g2478 590 MobiDBLite consensus disorder prediction 64 104 - -
Sed01g2478 590 MobiDBLite consensus disorder prediction 147 164 - -
Sed01g2478 590 MobiDBLite consensus disorder prediction 1 212 - -
Sed01g2478 590 MobiDBLite consensus disorder prediction 105 128 - -
Sed01g2478 590 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 509 IPR013083 -
Sed01g2478 590 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 444 504 IPR017455 -
Sed01g2478 590 MobiDBLite consensus disorder prediction 1 25 - -
Sed01g2478 590 CDD PTB 307 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2478 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2478 Sed-Chr1:18535811 Sed13g1558 Sed-Chr13:20766296 9.80E-225 dispersed
Sed01g2478 Sed-Chr1:18535811 Sed13g1557 Sed-Chr13:20766296 1.60E-259 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1153 . Blo12g00878 Bda01g00473 . Bpe02g00338 Bpe04g00253 Bma04g00253 Bma01g02381 . . Cma01g01984 Cma09g00093 Car01g01555 . . Cpe06g00055 . . . . . . . . . . . . . . . . . . . Lsi04g01762 Csa03g04294 Chy04g00402 . . . . . . . . . Sed01g2478 Cmo01g02042 . . . . Car09g00080 . Cpe02g00061 Bhi09g02071 Tan01g5041 Cmetu04g2661 . Hepe01g1602 Mch11g0101 . . . . . . . . . . . Cme04g00455
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005990 1 1 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 3 2 1 1 1 1 1 1 1 1 3 1 1 39