Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2480 ATGGCCGATGTTGCAGAAGCATTGCTGCGACTGCGCTGTTCATCATTTTTCTCCTCTCCTCCGCCATGTGTGGCCAATAAAATCCACTTTCATCGTCAATCTTTAGCTACAGTTCATTCCGGTCGTGGCGAAGTACCATATGGATCAAGAGGGCTCAAATTATCCAATGCTCCACCGCCGGTTAAATTCCGAGAAGATGATAGCGTTGACGATGATTCCGATGCTAGAAAGAGCCGTAACCAGCTGAAACGGGAAGCTCGAAGAGCCGTCCGATGGGGCATGGATCTCTCGTTCTTCTCCACTCCTCAGATTAAACGAATTCTTAGAGTGGCGGCCCTCGAGGAAGATGTCTTCGATGCAATAATGCTTGTGAAGAGGCTTGGACGTGATGTGAGAGAAGGAAAACGAAGGCAGTTCAGTTACATTGGAAAACTGCTGAGGGATGCTGAACCTGAATTAATGGACAGTTTAATACAGGCCACCAAAGACGGCGATCACAGCATGCTGCAGAAATTGTCTGGTTCAGTAGCATTTGGTGACGACGACGATTCAGAATCTGAAAATGAGGAGGAGGAAGAAGAAGAGGGTCTGCATGTGGACATTGCAACAATATGGCTAGATGGGTTAATCAGTAAAGACAACAGCATGACAAACGAAATTTACTCGCTACAAACTGTTGAATTTGACCGTCAGGAGCTGCGGAGACTTGTTCGAAAAATGCATATGGTCGAAGAACAAGAGACGACATCCGAAGAGAACGAGGAAGAAGTCAATGTGGCAAAAACAAACGCCAGAAAGCCCCTTGCTCGTTTTCTTTGTAGAATGGCAAAACAATTGCCCTCCTGTGAACTCTAG 855 46.43 MADVAEALLRLRCSSFFSSPPPCVANKIHFHRQSLATVHSGRGEVPYGSRGLKLSNAPPPVKFREDDSVDDDSDARKSRNQLKREARRAVRWGMDLSFFSTPQIKRILRVAALEEDVFDAIMLVKRLGRDVREGKRRQFSYIGKLLRDAEPELMDSLIQATKDGDHSMLQKLSGSVAFGDDDDSESENEEEEEEEGLHVDIATIWLDGLISKDNSMTNEIYSLQTVEFDRQELRRLVRKMHMVEEQETTSEENEEEVNVAKTNARKPLARFLCRMAKQLPSCEL 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18552440 18556241 + Sed0023128.1 Sed01g2480 701784

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2480 284 MobiDBLite consensus disorder prediction 180 196 - -
Sed01g2480 284 Coils Coil 226 263 - -
Sed01g2480 284 MobiDBLite consensus disorder prediction 47 82 - -
Sed01g2480 284 PANTHER OSJNBB0026I12.6 PROTEIN 11 281 - -
Sed01g2480 284 MobiDBLite consensus disorder prediction 63 82 - -
Sed01g2480 284 Gene3D - 87 165 IPR023153 -
Sed01g2480 284 CDD YjgA-like 76 239 IPR006839 -
Sed01g2480 284 MobiDBLite consensus disorder prediction 175 196 - -
Sed01g2480 284 Pfam Protein of unknown function (DUF615) 76 250 IPR006839 -
Sed01g2480 284 SUPERFAMILY PSPTO4464-like 88 251 IPR023153 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2480 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2480 Sed-Chr1:18552440 Sed13g1563 Sed-Chr13:20823147 3.90E-70 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1128 . . . . . . . Bma01g02373 . . . Cma09g00099 . . . Cpe06g00062 . . . . . . . . . . . . . . . Cone4ag1977 Cone7ag1895 . . Lsi04g01753 Csa03g04287 Chy04g00410 . . . . . . . . . Sed01g2480 . Cmo09g00096 . . . Car09g00087 . . Bhi09g02078 Tan01g5032 Cmetu04g0766 . . . . Cla05g01864 Cam05g1993 Cec05g2005 Cco05g2063 Clacu05g1985 Cmu05g1866 Cre05g1990 . . . Cme04g00461
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010806 0 2 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 32