Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2482 ATGGATACACAAATTTCATTCATAATATATCTCCTAACAATCCAAATTTTAATCTCAGGCGTATTTTCCACTACTTTTAGCATAGTCAACAAATGTGATTTCACAGTTTGGCCAGGAATTCTCACCAACGCCGGAGTTCCGCCGCTTCCGACCACCGGCTTCGTCCTCGCCGCCGGCGACTCCAAAACAATCTCCGCTCCGGCGAATTGGGGCGGCCGGTTCTGGGGCCGAACCCACTGCTCCCAAGACTCCGCCGGAAAATTCTCCTGCCTCACCGCCGACTGCGGCTCCGGCACGGTGGAGTGCGGCGGAAAAGGCGCTGAGCCGCCGGCGACTCTGGCGGAGTTCACACTCGACGGCGCCGGCGGACTGGATTTCTTCGACGTGAGCCTCGTCGACGGTTACAACGTTCCTATGCTGGTGGCCCCACAGGGCGGCTCCGGCGAGAAATGCGCGAGTACTGGTTGCGTGGTGGATTTGAACGGCTCGTGTCCTTCGGAGCTTAAGGTTACGAGCGTGGACGGCGGTGAGAGTGTCGCGTGCAAAAGCGCGTGCGAAGCGTTTAACCAGCCGCAGTTCTGTTGCAGCGGCGCGTACGCGACTCCGGATACGTGCAAACCAACTCCGTACTCGCAGGCGTTTAAAAACGCTTGCCCACGCGCTTACAGCTACGCTTACGACGATTTAACCAGCACGTTTACATGTCTCGACGCCGATTATATTATCACATTCTGCCCCTCGCCAATGACTAGGTGA 756 56.75 MDTQISFIIYLLTIQILISGVFSTTFSIVNKCDFTVWPGILTNAGVPPLPTTGFVLAAGDSKTISAPANWGGRFWGRTHCSQDSAGKFSCLTADCGSGTVECGGKGAEPPATLAEFTLDGAGGLDFFDVSLVDGYNVPMLVAPQGGSGEKCASTGCVVDLNGSCPSELKVTSVDGGESVACKSACEAFNQPQFCCSGAYATPDTCKPTPYSQAFKNACPRAYSYAYDDLTSTFTCLDADYIITFCPSPMTR 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18564854 18566102 + Sed0024955.2 Sed01g2482 701786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2482 251 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Sed01g2482 251 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Sed01g2482 251 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Sed01g2482 251 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Sed01g2482 251 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Sed01g2482 251 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Sed01g2482 251 PIRSF PR5 1 251 IPR001938 -
Sed01g2482 251 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Sed01g2482 251 PANTHER OS03G0233200 PROTEIN 9 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Sed01g2482 251 SMART tha2 26 246 IPR001938 -
Sed01g2482 251 Gene3D Thaumatin 24 246 IPR037176 -
Sed01g2482 251 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Sed01g2482 251 Pfam Thaumatin family 30 246 IPR001938 -
Sed01g2482 251 CDD TLP-PA 25 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2482 Sed-Chr1:18564854 Sed13g1562 Sed-Chr13:20815333 1.70E-130 dispersed
Sed01g2481 Sed-Chr1:18564854 Sed01g2482 Sed-Chr1:18564854 1.60E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2482 - - - 0.0