Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2484 ATGAAGAAGAAATCGCTCGATTCTGTTGTTTTCAATTTGTTTCTCTTCTGTTTAATCCTCTTCTCTGCTCGATTCTGCTTCGCCAATCGCGATATGGAAGCGCTGTTGAAGATCAAGACCGCCCTGATTGCGCCGGGGAGGTCCGGGATTAGAGATTGGGAGCCGTCGCCGTCGCCGTCGGCTCATTGCCACTTCCTTGGAGTTTCGTGCGATGCCGATTCTAGAGTTGTTGCGCTCTGCGTTTCGAATTTCCGTATGTTCGGCCAGATTCCGCCGGAGATTGGAATGCTGGAGAAGCTCGAGAACTTGACGCTGGTTAATAACAACCTCACCGGAAAAATTCCTCGCGAATTGGCGAAACTCACTTCGCTTAAGTTTCTTAATCTCTCTAACAATGCACTCGTCGATAGATTGCCGGCTGAAATCATGCTCGGAATGACGGAACTCGAGGTTGTCGATGTCTATAACAATGCACTTTCTGGTCAGCTTCCGGTGGAGTTCGTCCAGTTGAAGAAGCTTAAGCATCTTGATCTCGGCGGATGCTTCTTCACCGGTCAGATCCCGGAGGTGTACTCTGAGATGCAGGCGTTGGAGTTCTTGAGCGTTAGAGGAAATGCGCTTACCGGAAGGATTCCGGCGAGTTTAGCGCGGTTGAAGAATCTTAAGGAACTGTACGCAGGATATTTTAATCGTTACGACGGTGGAATTCCGGCGGAGTTTGGATCGTTGAGTTCTCTCGAGCTTCTTGATTTAGCCAACTGTAATCTCTCCGGTGAGATTCCTCCGAGTTTAGGTAATTTGAAGCAATTGCACAGTATATTCGTACAAATAAACAATCTCACCGGCCGGATTCCGTCTGAACTTTCCGGTTTAATCAGCCTTATGTCATTAGACCTCTCTCTGAACGAGCTCACCGGAGAGATTCCGGCGAGTTTCGAGGCGTTGCAGAACATTACACTGATCAATTTATTCAGCAACAAGCTTCACGGTCCGATTCCAGGCTTCATCGGTGATTTTCCTCACCTTGAAGTGCTTCAGTTATGGAGCAACAACTTCACGCTACAACTCCCCGCGAATCTCGGGCGTAACGGAAGACTGATTCTGCTCGACGTGGCTTCCAATCACCTAACCGGACTCGTTCCTTCGGGTTTATGTGACGGTAGGTTGGAGACGATGATTCTGCTAGATAATTACTTCTTCGGGCCCATACCTGAGAAATTAGGCCACTGCAATTCGTTAAAGAAAATCCGAATCGCCGGAAATTTCTTCAATGGAACGGTTCCGGCAGGGTTCTTCAACTCTCCGGCGTTGTCGATACTCGACATTAGCAACAATTACTTCTCCGGCGCTCTTCCGTCACAGATGTCCGGCAATTCTCTTGGAAGTTTACAGCTCAGTAACAACCACATCACCGGGGAAATTCCGGCGGCGATTAAGAATTTTCCGAACTTGCAGGTTCTTTCTCTGGAGCATAACCAATTCACCGGAGATTTACCTGTGGAAATATTCAAATTGAACAAGCTGTTGAGAGTCAACATCAGCTTCAACGAACTCAGAGGCGAAATTCCTCATTCGATCGTTAATTGCACTTCACTAACGTCGATTGATCTGAGTCAAAACGACCTCGTCGGCCGAATTCCAGAAGGAATTTCGGATCTGAATATCTTGAGTGTACTGAATTTGTCTAGAAATGAACTGAGTGGCCAAATCCCTAACGAAATCCGGTCGATGATGAGTCTCACAACTCTAGATTTGTCCTACAACAACTTCCATGGCGTAATCCCCACCGGCGGCCAGTTTTCGGTATTCAACGTCACCGCATTCGCCGGAAACCCGAACCTCTGTTTACCAAACCACGGACCTTGCGCATCACCACACAGCAACAAGAATTCCATCAAGCTAATCATCCCAATTGTTGCTGTATTCATCATTCTCATATCCATACTCGCCGGAATTTACATTAGGAAGAGAAAGCAGATTCTGAAATCAAAGGCATGGAAACTCACGGCATTCCAGCGCCTGACTTTCAAAGCGGAAGACGTCCTGGAGTGCTTAAAAGACGAGAACATCGTTGGGAAAGGTGGCGCGGGAGTGGTATATCGCGGATCAATGCCGGGTGGATCGGTGGTAGCAATCAAACTATTGCTAGGAAGTGGTCGGAACGACCACGGATTCTCAGCCGAGATTCAGACCCTGGGACGGATCAAGCACCGGAACATAGTCAGGCTTTTGGGGTACGTGTCGAACCGAGACACGAACCTGCTGCTTTACGAGTACATGCCGAACGGGAGCCTGGACCAGTGGCTGCATGGTGCGAAGGGCGGCCATTTGCAGTGGGACGTGCGGTACAGGATTGCTACTGAAGCCGCCAAGGGGCTGTGTTACTTGCACCATGATTGTACGCCGCTAATCATTCATAGGGACGTGAAGTCCAATAATATACTGCTGGATAAGTTCTTCGAGGCTCATGTCTCGGACTTCGGGCTCGCCAAGTTCTTGCAGAATGGAGGCGCGTCGGAGTGTATGTCCTCCATTGCTGGCTCCTATGGCTACATCGCTCCAGAATATGCCTACACGCTGAAAGTGGACGAAAAGAGTGACGTATATAGTTTTGGAGTGGTACTGTTAGAGCTTATAGCTGGTAGGAAGGCAGTGGGTGGTTTTGGCGAAGGCGTGGACATAGTAAGGTGGGTCCTAAAAACCACATCGGAGCTCTCTCAACCCTCCGATGCAGCCTCGGTACTAGCCATTGTTGATTCACGCCTCGCTGAATACCCTCTCCAAGGCGTCGTCCACCTCTTCAAAATAGCGATGATGTGCGTCGAAGAAGACAGCTCGGCAAGGCCAAACATGAGGGAGGTCGTCCACATGCTCTCAAATCCCCCAAGGTCTGCCCCTACTCTCATCAACCTTTAA 2916 49.14 MKKKSLDSVVFNLFLFCLILFSARFCFANRDMEALLKIKTALIAPGRSGIRDWEPSPSPSAHCHFLGVSCDADSRVVALCVSNFRMFGQIPPEIGMLEKLENLTLVNNNLTGKIPRELAKLTSLKFLNLSNNALVDRLPAEIMLGMTELEVVDVYNNALSGQLPVEFVQLKKLKHLDLGGCFFTGQIPEVYSEMQALEFLSVRGNALTGRIPASLARLKNLKELYAGYFNRYDGGIPAEFGSLSSLELLDLANCNLSGEIPPSLGNLKQLHSIFVQINNLTGRIPSELSGLISLMSLDLSLNELTGEIPASFEALQNITLINLFSNKLHGPIPGFIGDFPHLEVLQLWSNNFTLQLPANLGRNGRLILLDVASNHLTGLVPSGLCDGRLETMILLDNYFFGPIPEKLGHCNSLKKIRIAGNFFNGTVPAGFFNSPALSILDISNNYFSGALPSQMSGNSLGSLQLSNNHITGEIPAAIKNFPNLQVLSLEHNQFTGDLPVEIFKLNKLLRVNISFNELRGEIPHSIVNCTSLTSIDLSQNDLVGRIPEGISDLNILSVLNLSRNELSGQIPNEIRSMMSLTTLDLSYNNFHGVIPTGGQFSVFNVTAFAGNPNLCLPNHGPCASPHSNKNSIKLIIPIVAVFIILISILAGIYIRKRKQILKSKAWKLTAFQRLTFKAEDVLECLKDENIVGKGGAGVVYRGSMPGGSVVAIKLLLGSGRNDHGFSAEIQTLGRIKHRNIVRLLGYVSNRDTNLLLYEYMPNGSLDQWLHGAKGGHLQWDVRYRIATEAAKGLCYLHHDCTPLIIHRDVKSNNILLDKFFEAHVSDFGLAKFLQNGGASECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIAGRKAVGGFGEGVDIVRWVLKTTSELSQPSDAASVLAIVDSRLAEYPLQGVVHLFKIAMMCVEEDSSARPNMREVVHMLSNPPRSAPTLINL 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18576842 18581685 - Sed0018613.1 Sed01g2484 701788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2484 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 760 969 - -
Sed01g2484 971 Pfam Protein kinase domain 687 955 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2484 971 SMART serkin_6 685 958 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2484 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 144 230 - -
Sed01g2484 971 Gene3D Ribonuclease Inhibitor 144 229 IPR032675 -
Sed01g2484 971 Gene3D Ribonuclease Inhibitor 30 143 IPR032675 -
Sed01g2484 971 SMART LRR_typ_2 146 170 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 243 267 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 339 363 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 291 314 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 121 145 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 481 505 IPR003591 -
Sed01g2484 971 SMART LRR_typ_2 553 577 IPR003591 -
Sed01g2484 971 Gene3D Transferase(Phosphotransferase) domain 1 760 965 - -
Sed01g2484 971 SUPERFAMILY L domain-like 315 607 - -
Sed01g2484 971 Pfam Leucine Rich Repeat 556 577 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 99 121 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 460 481 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 172 190 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 245 267 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Pfam Leucine Rich Repeat 579 596 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Gene3D Phosphorylase Kinase; domain 1 652 759 - -
Sed01g2484 971 FunFam LRR receptor-like serine/threonine-protein kinase EFR 336 628 - -
Sed01g2484 971 ProSitePatterns Serine/Threonine protein kinases active-site signature. 804 816 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed01g2484 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 759 - -
Sed01g2484 971 Pfam Leucine rich repeat 482 542 IPR001611 GO:0005515(InterPro)
Sed01g2484 971 Gene3D Ribonuclease Inhibitor 498 622 IPR032675 -
Sed01g2484 971 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 959 IPR050647 -
Sed01g2484 971 FunFam Leucine-rich repeat receptor-like kinase 30 143 - -
Sed01g2484 971 ProSiteProfiles Protein kinase domain profile. 685 968 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed01g2484 971 Gene3D Ribonuclease Inhibitor 230 385 IPR032675 -
Sed01g2484 971 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 231 335 - -
Sed01g2484 971 Pfam Leucine rich repeat N-terminal domain 29 71 IPR013210 -
Sed01g2484 971 SUPERFAMILY L domain-like 70 381 - -
Sed01g2484 971 SUPERFAMILY Protein kinase-like (PK-like) 678 958 IPR011009 -
Sed01g2484 971 Gene3D Ribonuclease Inhibitor 386 497 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2484 Sed-Chr1:18576842 Sed07g1794 Sed-Chr7:19908111 5.20E-130 dispersed
Sed01g2484 Sed-Chr1:18576842 Sed10g0775 Sed-Chr10:5481805 5.20E-130 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78679 PF07714 PK_Tyr_Ser-Thr 5.60E-41 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2484 - - - 0.0