Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed01g2488 ATGCAGTATCGTTTTCCTTTATCTTTTGATGGTTGGCTTATTCTGGATAGGAATAGTTTTTTGCCATGTTTAGTCTGCCTCAGTAGATTTTTCATTTTTTTGTGTACATTTAGGTATCTCCTTTGTACGGTTGGTTCGGTTTACATGAAATCTAAGGAAGTCCCCGCGAAAGAGGTCCTCAAAGATCTTGTAGAAATGTGTCGTGGAGTTCAACATCCAATACGTGGGCTCTTTCTCAGAAATTATCTAGCTCAAGTCAGCAGGGACATATTGCTCGATATTAATTCTGAGTGCGAAGGAGATGCCAACACTGTCATGGAGTCCGTAGAATTTGTGCTACAGAATTTTACTGAAATGAATAAACTTTGGGTGCGAATTCAGCTACAGGGACCAGTTCGTTTGAGAGAGAAGCAGGAAAAAGAAAGAAGCGAACTCCGTGACCTTGTAGGAAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTGGACCTTGAAATGTACAAGCAGACTGTTTTACCTAGGGTCTTAGAGCAGGTGGTCAACTGCAAAGATGAATTAGCTCAGTGCTATCTGATGGATTGCATTATTCAGGTGTTTCCAGATGAATACCATTTGCAGACACTTGAGACATTGTTGGGTGTTTGCCCGCAGCTTCAGGCGGCCGTTGACATCAGGATGGTTCTATCTCAATTAATGGACAGACTATCAAACTATGCTGTTTCAAATGCAGATGTAATACCTGAATTTCTGCATGTAGAAGCCTTTGCTAAGTTGAGCAATGCCATTGGGAAGGTTATAGAAGCACAGGTTGACATGCCTATTGTTGGAGCTATAACATTGTATGTCTCACTTCTGACATTTACCCTTCGTGTTCATCCAGATCGACTTGATTATGTGGACCAAATATTGGGAGCATGCGTTAAGAAACTCTCCAGCCAACCAAAGCTTGAAGATCCAAGAGCAACAAAACAAATAGTTATGCTTCTCAGTGCTCCATTAGAGAAATATAATGATATTGTAACAGCACTTACACTCTCAAATTATCCTCGTGTCATGGATCACCTGGACAATGCCACAAACAAAGTTATGGCCATGGTTATTATTCAAAGTATAATGAAAAATAACTCTTGCATTTCCACTGCTGATAAGGTTGATGTGTTGTTCAAACTAATAAAAGGGCTTATCAAGGACTTGGAAGAAACTACTGTGGATGAGCTCGACGAAGAGGATTTCAAGGAAGAGCAAAATTCTGTTGCCCGCCTTCTACACATGCTACATAATGATGACCCAGTGGAAATGTTAAAGATTATCTGTGCCGTGAAGAAACAAATTTTGTTTGGAGGACCAAATCGCCTGCCTTTCACTGTTCCCCCCTTAATATTTTCTGCGCTCAGTTTAATTAGACGGTTGCAAAATCAAGATGGGGATGTGGTGGGAGAAGAGCAACCAGAAGATGGGGATGTGGTAGAAGAAATGCATGCTACACCAAAGAAGATATTTCAGCTTTTAAATCAGCTTATTGAGGCTCTTTCCTCTGTTCCAGCTCCTGAACTGGCGTTAAGGTTATACCTGGAATGTGCTGAGGCGGCCAATGACTGTGATCTTGAGCCTGTTGCATACGAGTTTTTTACCCAAGCATTTACAATCTATGAAGAAGATATTACGGATTCTAAGGCTCAAGTGACTGCAATTCACCTTATCATTGGGACTCTCCAGAGGATGAATGTGTTTGGTATAGAGAACAGAGATACCTTGACACACAAGGCTACTGGGTACTCCGCCAAGCTCCTAAAGAAACCTGATCAGTGTAGGGCTGTTTATGCATGCTCACATCTCTTCTGGGTTGATGATCCAGAAGGCATTAAGGATGGAGAGAGAGTTCTTCTTTGTCTAAAGCGTGCCCTACGAATTGCAAATGCTGCTCAACAGATGGCTAATGTTACACGGGGTAGCAGTGGACCCGTCACACTCTTTGTCGAAATACTGAACAAATACCTCTATTATTTCGAGAAAGGAAACCAGCTGATTACAAATGCAGCAATCCAAGGTTTGATTGAGTTAATAACAACTGAATTGCAGACGGACTCTCCGAGCGCCAGTCCTCCTTCGGATGCTTTCTTTACCAGCACGCTTCGGTACATTCAGTTCCAGAAACAGAAAGGTGGTGTCATGGGCGAGAGATATGATTCTATCAAGGTTTGA 2202 41.96 MQYRFPLSFDGWLILDRNSFLPCLVCLSRFFIFLCTFRYLLCTVGSVYMKSKEVPAKEVLKDLVEMCRGVQHPIRGLFLRNYLAQVSRDILLDINSECEGDANTVMESVEFVLQNFTEMNKLWVRIQLQGPVRLREKQEKERSELRDLVGKNLHVLSQIEGVDLEMYKQTVLPRVLEQVVNCKDELAQCYLMDCIIQVFPDEYHLQTLETLLGVCPQLQAAVDIRMVLSQLMDRLSNYAVSNADVIPEFLHVEAFAKLSNAIGKVIEAQVDMPIVGAITLYVSLLTFTLRVHPDRLDYVDQILGACVKKLSSQPKLEDPRATKQIVMLLSAPLEKYNDIVTALTLSNYPRVMDHLDNATNKVMAMVIIQSIMKNNSCISTADKVDVLFKLIKGLIKDLEETTVDELDEEDFKEEQNSVARLLHMLHNDDPVEMLKIICAVKKQILFGGPNRLPFTVPPLIFSALSLIRRLQNQDGDVVGEEQPEDGDVVEEMHATPKKIFQLLNQLIEALSSVPAPELALRLYLECAEAANDCDLEPVAYEFFTQAFTIYEEDITDSKAQVTAIHLIIGTLQRMNVFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDPEGIKDGERVLLCLKRALRIANAAQQMANVTRGSSGPVTLFVEILNKYLYYFEKGNQLITNAAIQGLIELITTELQTDSPSASPPSDAFFTSTLRYIQFQKQKGGVMGERYDSIKV 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 18601429 18614398 + Sed0010944.2 Sed01g2488 701792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed01g2488 733 Gene3D - 399 718 IPR042491 -
Sed01g2488 733 PANTHER VACUOLAR SORTING PROTEIN 35 39 732 IPR005378 GO:0005770(PANTHER)|GO:0006886(PANTHER)|GO:0015031(InterPro)|GO:0030904(PANTHER)|GO:0030906(InterPro)|GO:0042147(PANTHER)|GO:0042147(InterPro)
Sed01g2488 733 FunFam Vacuolar protein sorting-associated protein 35 399 718 - -
Sed01g2488 733 PIRSF Retromer_Vps35 38 733 IPR005378 GO:0015031(InterPro)|GO:0030906(InterPro)|GO:0042147(InterPro)
Sed01g2488 733 Pfam Vacuolar protein sorting-associated protein 35 39 690 IPR005378 GO:0015031(InterPro)|GO:0030906(InterPro)|GO:0042147(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed01g2488 K18468 - - csv:101213893 1278.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2488 Sed-Chr1:18601429 Sed04g0964 Sed-Chr4:11173680 1.80E-300 dispersed
Sed01g2487 Sed-Chr1:18601429 Sed01g2488 Sed-Chr1:18601429 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1148 Blo01g01607 . Bda01g00474 . . . . Bma01g02380 . . Cma01g01983 Cma09g00094 Car01g01554 . . Cpe06g00056 . . . . . . . . . . . . . . . . . . . . Csa03g04293 Chy04g00403 . . . . . . . . . Sed01g2488 Cmo01g02041 Cmo09g00091 . . . Car09g00081 . Cpe02g00062 Bhi09g02073 Tan01g5039 Cmetu04g2094 . Hepe01g1603 Mch11g0102 . . . . . . . . . . . Cme04g00456
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001755 3 3 2 3 2 2 4 2 2 2 1 1 4 2 1 3 1 2 4 2 2 2 2 2 2 1 2 4 3 2 68